WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2569264

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
13842446	GT-AG	1.410222907481496e-05	1432	rna-XM_026088757.1 2569264	1	3675112	3676543	Apteryx rowi 308060	CAG\|GTATGTAACA...GACTGTGTGATC/GACTGTGTGATC...CCCAG\|CTT	2	1	35.827
13842447	GT-AG	1.000000099473604e-05	17929	rna-XM_026088757.1 2569264	2	3657014	3674942	Apteryx rowi 308060	CAG\|GTAAGGGACT...AGATTTTTAATC/AGATTTTTAATC...GACAG\|CTT	0	1	42.518
13842448	GT-AG	0.0001441327906318	2126	rna-XM_026088757.1 2569264	3	3654685	3656810	Apteryx rowi 308060	AAC\|GTAAGCATTT...CTACTCTGAGTG/CCTACTCTGAGT...GGCAG\|CAT	2	1	50.554
13842449	GT-AG	2.0159343372975725e-05	11116	rna-XM_026088757.1 2569264	4	3643396	3654511	Apteryx rowi 308060	GCT\|GTAAGTATGC...ATTTCATTCATG/GTTGATTTCATT...CACAG\|CCC	1	1	57.403
13842450	GT-AG	1.000000099473604e-05	13021	rna-XM_026088757.1 2569264	5	3630234	3643254	Apteryx rowi 308060	CAG\|GTAAGACAGT...TTGTGTTTAAAA/TTGTGTTTAAAA...TTTAG\|ATG	1	1	62.985
13842451	GT-AG	4.741717207948135e-05	943	rna-XM_026088757.1 2569264	6	3629235	3630177	Apteryx rowi 308060	CCT\|GTAAGTATGC...TATTTTTTGCCT/CAGTTGCTAATC...TTCAG\|AGT	0	1	65.202
13842452	GT-AG	1.000000099473604e-05	1610	rna-XM_026088757.1 2569264	7	3627498	3629107	Apteryx rowi 308060	CAG\|GTAATTCCCA...ATGTCCTTTGCA/CTGTTTCTCATC...TCTAG\|TAC	1	1	70.23
13842453	GT-AG	0.000265873252232	30057	rna-XM_026088757.1 2569264	8	3596745	3626801	Apteryx rowi 308060	ACG\|GTAAGCCCCA...CTTTCCTTATTT/TCTTTCCTTATT...CACAG\|TTA	1	1	97.783

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);