introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 25621971

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
141635059 GT-AG 0 1.000000099473604e-05 87 rna-OFUS_LOCUS3102 25621971 1 55480842 55480928 Owenia fusiformis 6347 CAG|GTAATACTGT...CACTTGTTACAT/ATAATGGTGACT...TTCAG|TAA 1 1 37.557
141635060 GT-AG 0 1.000000099473604e-05 152 rna-OFUS_LOCUS3102 25621971 2 55490156 55490307 Owenia fusiformis 6347 CAG|GTAAGAATTG...AATATCTTAATG/TAATATCTTAAT...ATCAG|GTA 0 1 66.579
141635061 GT-AG 0 0.000430079254612 241 rna-OFUS_LOCUS3102 25621971 3 55490996 55491236 Owenia fusiformis 6347 AAG|GTATGTATTC...TTATTCTTTTCT/AATTTTCTAATC...TCTAG|GAA 1 1 68.743
141635062 GT-AG 0 3.285589429784587e-05 156 rna-OFUS_LOCUS3102 25621971 4 55491458 55491613 Owenia fusiformis 6347 GCT|GTAAGTTAAC...AATACTTAGACA/CCAATACTTAGA...TTTAG|GAA 0 1 69.438
141635063 GT-AG 0 1.000000099473604e-05 218 rna-OFUS_LOCUS3102 25621971 5 55491754 55491971 Owenia fusiformis 6347 CAG|GTAAGTTCAC...TGTATCATACAT/AGTTGTATCATA...TCTAG|ATG 2 1 69.878
141635064 GT-AG 0 2.040677662509508e-05 200 rna-OFUS_LOCUS3102 25621971 6 55492070 55492269 Owenia fusiformis 6347 CAG|GTACAGTATT...TAATCCTTCAAT/ATTAGTTTAATA...TGCAG|GTA 1 1 70.186
141635065 GT-AG 0 1.000000099473604e-05 196 rna-OFUS_LOCUS3102 25621971 7 55492535 55492730 Owenia fusiformis 6347 AAC|GTGAGTTTGA...TTTATTTTGTCA/CATGTTTTTATT...TTCAG|TAC 2 1 71.02
141635066 GT-AG 0 1.841023118716726e-05 197 rna-OFUS_LOCUS3102 25621971 8 55501842 55502038 Owenia fusiformis 6347 CGG|GTAAGTTTCT...CTGTTTGTAATA/CTGTTTGTAATA...TTCAG|AGC 2 1 99.676

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);