WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 25439191

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
140325607	GT-AG	3.1750832918707624e-05	164	rna-XM_015758719.2 25439191	1	30194796	30194959	Oryza sativa 4530	AAG\|GTTCGTTGTC...CTTTTTTTGACG/CTTTTTTTGACG...TGCAG\|TCT	0	1	6.802
140325608	GT-AG	1.000000099473604e-05	96	rna-XM_015758719.2 25439191	2	30194645	30194740	Oryza sativa 4530	TGG\|GTAAAAAAAA...TGTGGCTTAATT/TGTGGCTTAATT...TGCAG\|AGG	1	1	8.286
140325609	GT-AG	1.000000099473604e-05	1184	rna-XM_015758719.2 25439191	3	30193282	30194465	Oryza sativa 4530	AAG\|GTTAGTTAAT...TTTCTCTTTGCT/ATTTTTTTCATC...AACAG\|GTT	0	1	13.117
140325610	GT-AG	0.046001164047461	92	rna-XM_015758719.2 25439191	4	30192732	30192823	Oryza sativa 4530	CCT\|GTATGTTCTT...ATGACCATACTA/ATACTACTAAAA...TGCAG\|ATC	2	1	25.479
140325611	GT-AG	1.000000099473604e-05	82	rna-XM_015758719.2 25439191	5	30192109	30192190	Oryza sativa 4530	AAG\|GTATGTGCAT...CATGCCCTGCCC/CTGTGTCTGATG...TGCAG\|ATT	0	1	40.081
140325612	GT-AG	6.45603552198632e-05	101	rna-XM_015758719.2 25439191	6	30191828	30191928	Oryza sativa 4530	CTG\|GTAAACATCG...ATACATTTAAAT/GTGGCGCTGATT...ATCAG\|GTA	0	1	44.939
140325613	GT-AG	0.0262446932903183	129	rna-XM_015758719.2 25439191	7	30190418	30190546	Oryza sativa 4530	CAG\|GTATCATATA...ATGACCTTGTTG/AATAAAATAACA...TGCAG\|GTG	0	1	79.514
140325614	GT-AG	0.0002089990125573	98	rna-XM_015758719.2 25439191	8	30189913	30190010	Oryza sativa 4530	ATC\|GTAAGTTCTT...TTCCTGTTAAAT/AATGTACTAAAG...TTCAG\|ATC	2	1	90.499

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);