WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 25439161

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
140325263	GT-AG	0.0001034601673916	740	rna-XM_015795670.2 25439161	1	37896478	37897217	Oryza sativa 4530	CCC\|GTGAGCTCTC...GATGTTTTGATT/GATGTTTTGATT...TGTAG\|AAC	2	1	3.432
140325264	GT-AG	1.000000099473604e-05	535	rna-XM_015795670.2 25439161	2	37895830	37896364	Oryza sativa 4530	AAG\|GTGATCTCTT...TTGTTCATATTA/GTATTTCTAATT...TTCAG\|GAT	1	1	6.144
140325265	GT-AG	1.000000099473604e-05	77	rna-XM_015795670.2 25439161	3	37895545	37895621	Oryza sativa 4530	AGG\|GTAAATTGGC...TACTTCATACTA/ATGTACTTCATA...TGCAG\|TCC	2	1	11.135
140325266	GT-AG	0.0052390452999477	74	rna-XM_015795670.2 25439161	4	37894915	37894988	Oryza sativa 4530	CAG\|GTATGTTTTA...CATTTTTTACTC/TCATTTTTTACT...CATAG\|GTT	0	1	24.478
140325267	GT-AG	0.000722426120735	187	rna-XM_015795670.2 25439161	5	37894476	37894662	Oryza sativa 4530	TGG\|GTATGGCTTC...TGTGCTTTATTC/GCTTTATTCATT...CTCAG\|TTG	0	1	30.526
140325268	GT-AG	1.000000099473604e-05	71	rna-XM_015795670.2 25439161	6	37894213	37894283	Oryza sativa 4530	AAG\|GTACTAGCGA...TTTTCTTTGCTT/GCTTTACTGATC...TGCAG\|GTG	0	1	35.133
140325269	GT-AG	0.016834747731953	91	rna-XM_015795670.2 25439161	7	37894047	37894137	Oryza sativa 4530	TTG\|GTATTTTTAT...TTCTATTTGATC/TTCTATTTGATC...TTTAG\|GTT	0	1	36.933
140325270	GT-AG	0.0042374968811162	480	rna-XM_015795670.2 25439161	8	37891227	37891706	Oryza sativa 4530	GTG\|GTATGTTCCT...TTCGCTTTCATA/TTCGCTTTCATA...TTCAG\|ATG	0	1	93.089

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);