WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 25439142

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
140324974	GT-AG	3.2262027221975044e-05	119	rna-XM_015762000.2 25439142	1	3807107	3807225	Oryza sativa 4530	AAG\|GTATGATATG...AAGGTTTTATAC/TAAGGTTTTATA...TGTAG\|GAA	0	1	53.187
140324975	GT-AG	1.000000099473604e-05	84	rna-XM_015762000.2 25439142	2	3807313	3807396	Oryza sativa 4530	CTG\|GTAATGATTT...ATTGCCATGAAA/AATTGACTAACT...TGTAG\|GTC	0	1	55.113
140324976	GT-AG	1.000000099473604e-05	82	rna-XM_015762000.2 25439142	3	3808036	3808117	Oryza sativa 4530	AGA\|GTAAGTCATG...CTTGGTTTATTT/GCTTGGTTTATT...CCTAG\|GCT	0	1	69.256
140324977	GT-AG	0.0004110701513482	80	rna-XM_015762000.2 25439142	4	3808283	3808362	Oryza sativa 4530	CAG\|GTACTTTTGC...CACTCTTCAATC/TCAATCCTCACC...TGCAG\|CGT	0	1	72.908
140324978	GT-AG	2.2285749538510097e-05	81	rna-XM_015762000.2 25439142	5	3808658	3808738	Oryza sativa 4530	CAG\|GTATGGTGAC...ACTTTGTTAATA/ACTTTGTTAATA...TTCAG\|GAA	1	1	79.438
140324979	GT-AG	1.000000099473604e-05	171	rna-XM_015762000.2 25439142	6	3808954	3809124	Oryza sativa 4530	CAT\|GTAATAGCTC...TATCTCTGAACA/ATATCTCTGAAC...TGCAG\|GTG	0	1	84.197
140324980	GT-AG	1.000000099473604e-05	108	rna-XM_015762000.2 25439142	7	3809431	3809538	Oryza sativa 4530	GAG\|GTAGTTCCAG...TTGCCCTTCCTT/TCTATTATGATT...TTCAG\|GCC	0	1	90.969
140324981	GT-AG	1.000000099473604e-05	132	rna-XM_015762000.2 25439142	8	3809603	3809734	Oryza sativa 4530	CAG\|GTCCGTTCGG...TAATTCTTGGTG/TTCTTGGTGAAT...TGCAG\|TGA	1	1	92.386
140324982	GT-AG	1.000000099473604e-05	175	rna-XM_015762000.2 25439142	9	3809975	3810149	Oryza sativa 4530	ACG\|GTGAGTTTAG...GTCTGTCTGACG/GTCTGTCTGACG...TGCAG\|GTG	1	1	97.698

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);