WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 25439138

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
140324927	GT-AG	1.000000099473604e-05	155	rna-XM_015759410.2 25439138	1	40489463	40489617	Oryza sativa 4530	AAG\|GTGAGCACGC...TTCGATTTGATG/TTCGATTTGATG...CGCAG\|ATG	1	1	0.936
140324928	GT-AG	1.000000099473604e-05	312	rna-XM_015759410.2 25439138	2	40489079	40489390	Oryza sativa 4530	AAG\|GTCGGGGCCC...AAGTCGTTGACC/CTTTTGCTAAGT...TGCAG\|ATC	1	1	2.502
140324929	GT-AG	1.000000099473604e-05	159	rna-XM_015759410.2 25439138	3	40488849	40489007	Oryza sativa 4530	AAG\|GTTTGTGATG...CGGTCATTAATG/CGGTCATTAATG...TGCAG\|ATT	0	1	4.047
140324930	GT-AG	0.0002406473343148	86	rna-XM_015759410.2 25439138	4	40487911	40487996	Oryza sativa 4530	GAG\|GTAACATTTT...GCATATTTATCT/TGCCTATTCATT...TGTAG\|GCT	0	1	22.585
140324931	GT-AG	3.369484646435722e-05	128	rna-XM_015759410.2 25439138	5	40487689	40487816	Oryza sativa 4530	AAG\|GTATGTACAC...GGGTTCTTTTCT/CTGAAGCTAACT...TTCAG\|GAT	1	1	24.63
140324932	GT-AG	1.000000099473604e-05	105	rna-XM_015759410.2 25439138	6	40486741	40486845	Oryza sativa 4530	AAG\|GTTAGTTTCC...TTTTTTTTATTT/TTTTTTTTTATT...CGCAG\|AAA	1	1	42.972
140324933	GT-AG	0.0052437165517698	201	rna-XM_015759410.2 25439138	7	40484385	40484585	Oryza sativa 4530	CTG\|GTATTATTCT...ATCATTTTGATG/TGATTTCTGATC...ATAAG\|CAG	2	1	89.861
140324934	GT-AG	0.1258420076800211	264	rna-XM_015759410.2 25439138	8	40483975	40484238	Oryza sativa 4530	ATG\|GTATGCCTTT...CAAGCTTTGATG/CAAGCTTTGATG...TGCAG\|ATC	1	1	93.037

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);