WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 25413779

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
140208802	GT-AG	1.000000099473604e-05	190	rna-XM_006644583.3 25413779	1	22784477	22784666	Oryza brachyantha 4533	AAG\|GTCCGTCGCG...TTTTTCTTCGTG/TTTCTGCTGAAT...TGCAG\|TCT	0	1	6.575
140208803	GT-AG	1.000000099473604e-05	155	rna-XM_006644583.3 25413779	2	22784267	22784421	Oryza brachyantha 4533	TGG\|GTAAGTAAAC...ATGTTCTTAATC/ATGTTCTTAATC...TGCAG\|AGG	1	1	8.063
140208804	GT-AG	1.000000099473604e-05	1441	rna-XM_006644583.3 25413779	3	22782647	22784087	Oryza brachyantha 4533	AAG\|GTTAATCTCG...ATTTTTTTAAAA/ATTTTTTTAAAA...AACAG\|GTT	0	1	12.906
140208805	GT-AG	0.6645685443109544	90	rna-XM_006644583.3 25413779	4	22782099	22782188	Oryza brachyantha 4533	CCT\|GTATGTTCTT...AAAACTTTAACC/AAAACTTTAACC...TGCAG\|ATC	2	1	25.298
140208806	GT-AG	1.396463493341851e-05	85	rna-XM_006644583.3 25413779	5	22781473	22781557	Oryza brachyantha 4533	AAG\|GTATGTGCAT...GGCACCTAATTT/TGGCACCTAATT...TGCAG\|ATT	0	1	39.935
140208807	GT-AG	0.000780640768794	100	rna-XM_006644583.3 25413779	6	22781193	22781292	Oryza brachyantha 4533	TTG\|GTAAACTACG...ATATACTTAATT/GTAGTACTGATT...ATCAG\|GTA	0	1	44.805
140208808	GT-AG	0.0281379237920359	148	rna-XM_006644583.3 25413779	7	22779764	22779911	Oryza brachyantha 4533	CAG\|GTATCATATT...GCACCCCTAGCT/ACAAAGCTAAAT...TGCAG\|GTG	0	1	79.464
140208809	GT-AG	1.3693813948371644e-05	98	rna-XM_006644583.3 25413779	8	22779259	22779356	Oryza brachyantha 4533	CTC\|GTAAGTCTTC...TTCTTGTCAAAT/GATATACTAAAG...TTCAG\|ATC	2	1	90.476

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);