WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 25413729

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
140208178	GT-AG	1.000000099473604e-05	186	rna-XM_015843710.2 25413729	1	31335196	31335381	Oryza brachyantha 4533	AAG\|GTGAGCCCCC...TTTGCCTTGTTT/TTCGATTTGATT...CGCAG\|ATG	1	1	1.0
140208179	GT-AG	1.000000099473604e-05	324	rna-XM_015843710.2 25413729	2	31334800	31335123	Oryza brachyantha 4533	AAG\|GTCCGGGCCC...AAGTCGTTGACC/CTTTTGCTAAGT...CGCAG\|ATC	1	1	2.566
140208180	GT-AG	1.000000099473604e-05	129	rna-XM_015843710.2 25413729	3	31334600	31334728	Oryza brachyantha 4533	AAG\|GTTTGTGAGG...TATTCATTGATG/GAAATATTCATT...TGCAG\|ATT	0	1	4.11
140208181	GT-AG	0.0001136628452418	99	rna-XM_015843710.2 25413729	4	31333640	31333738	Oryza brachyantha 4533	GAG\|GTAACATCTT...GCATTCTTATGT/TGTATTTTTATG...CATAG\|GCT	0	1	22.831
140208182	GT-AG	5.994808842637124e-05	135	rna-XM_015843710.2 25413729	5	31333411	31333545	Oryza brachyantha 4533	AAG\|GTATGTACAT...TCTTTCTGGACA/CTGAATCTAACT...TTCAG\|GGT	1	1	24.875
140208183	GT-AG	1.000000099473604e-05	98	rna-XM_015843710.2 25413729	6	31332479	31332576	Oryza brachyantha 4533	AAG\|GTTAGTTTCC...TTGTTTTTACTT/TTTGTTTTTACT...CGCAG\|AAA	1	1	43.009
140208184	GT-AG	0.0030377212959083	551	rna-XM_015843710.2 25413729	7	31329767	31330317	Oryza brachyantha 4533	CTG\|GTATTGTTCT...ATCATTTTGATG/TTATTTCTGATC...TGCAG\|GCC	2	1	89.998
140208185	GT-AG	0.0037454091751375	320	rna-XM_015843710.2 25413729	8	31329304	31329623	Oryza brachyantha 4533	ACG\|GTACGCCTTT...AGTAACTTGACT/CTGGGTTTGACG...TGCAG\|ATC	1	1	93.107

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);