WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 25075814

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
137882822	GT-AG	1.000000099473604e-05	81	rna-XM_020760942.1 25075814	1	585551	585631	Orbicella faveolata 48498	CAG\|GTAACACAAA...CACTTATTAATG/AACGCTTTCATT...ACCAG\|CTC	0	1	4.009
137882823	GT-AG	2.7097414094461437e-05	103	rna-XM_020760942.1 25075814	2	585726	585828	Orbicella faveolata 48498	AAG\|GTAAACTACG...AAAATTGTGATT/AAAATTGTGATT...TGCAG\|AAT	1	1	10.987
137882824	GT-AG	0.0011153608596435	158	rna-XM_020760942.1 25075814	3	585877	586034	Orbicella faveolata 48498	AAG\|GTAACTATGT...TTTTCTTTTGCT/TAACGTTTAATT...TTAAG\|CGC	1	1	14.551
137882825	GT-AG	0.0001678074258816	748	rna-XM_020760942.1 25075814	4	586113	586860	Orbicella faveolata 48498	AAG\|GTAACTGTCA...GCATTTTTGTCT/TTGAAAATGAAT...TGTAG\|GCA	1	1	20.341
137882826	GT-AG	0.000108928186696	675	rna-XM_020760942.1 25075814	5	587200	587874	Orbicella faveolata 48498	AAG\|GTATGATTAA...TTCATGTTATCT/CTTCATGTTATC...TTCAG\|AAC	1	1	45.509
137882827	GT-AG	1.3348529931323808e-05	3162	rna-XM_020760942.1 25075814	6	587959	591120	Orbicella faveolata 48498	AAG\|GTAAATTTTT...TTATTCGAAACA/AATGTAATAATT...TTCAG\|CCG	1	1	51.745
137882828	GT-AG	1.000000099473604e-05	2859	rna-XM_020760942.1 25075814	7	591232	594090	Orbicella faveolata 48498	ACG\|GTGAGTGCAG...AGATTCCTAACA/CATTTAATCACT...TTCAG\|CTC	1	1	59.985

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);