WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 24953050

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
137151610	GT-AG	0.0039239364786661	900	rna-XM_041397700.1 24953050	1	30339801	30340700	Onychostruthus taczanowskii 356909	AAG\|GTAACCCCGG...TATTTATTAATA/TATTTATTAATA...AAAAG\|CAG	0	1	3.058
137151611	GT-AG	1.1977621608097653e-05	1646	rna-XM_041397700.1 24953050	2	30341577	30343222	Onychostruthus taczanowskii 356909	CAG\|GTAAAGTGTT...TCTTCCTTGAAA/AACTGTTTAAAA...TTAAG\|GCA	0	1	30.965
137151612	GT-AG	0.001105250167517	704	rna-XM_041397700.1 24953050	3	30343475	30344178	Onychostruthus taczanowskii 356909	GAG\|GTATGGTTCT...TTTTTCCTAATA/AATAATCTCATT...GACAG\|CTA	0	1	38.993
137151613	GT-AG	1.000000099473604e-05	351	rna-XM_041397700.1 24953050	4	30344272	30344622	Onychostruthus taczanowskii 356909	AAG\|GTGAGTTTTT...CCTTTTTTATTC/CCCTTTTTTATT...CCTAG\|GTG	0	1	41.956
137151614	GT-AG	1.000000099473604e-05	1105	rna-XM_041397700.1 24953050	5	30344776	30345880	Onychostruthus taczanowskii 356909	AAG\|GTAATAAAGC...TTTTCCTTATAT/TTTTTCCTTATA...TGAAG\|GTT	0	1	46.83
137151615	GT-AG	1.000000099473604e-05	653	rna-XM_041397700.1 24953050	6	30346022	30346674	Onychostruthus taczanowskii 356909	GAG\|GTATGGAACA...CATCTCTTGTAT/CAGTTAATCATC...GACAG\|AGC	0	1	51.322
137151616	GT-AG	0.0940730308640874	1654	rna-XM_041397700.1 24953050	7	30346814	30348467	Onychostruthus taczanowskii 356909	ACG\|GTAACCTCTT...TACTTCTTTCCC/CAATATTAGATT...TTCAG\|GTT	1	1	55.75
137154339	GT-AG	0.0083765000157453	812	rna-XM_041397700.1 24953050	8	30349473	30350284	Onychostruthus taczanowskii 356909	CCT\|GTAAGCTTTC...TTTTTTTTCCCT/ATTTTTGTTAGA...TTCAG\|ATG		0	87.767

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);