introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 24953030

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
137151309 GT-AG 0 9.565863441426773e-05 382 rna-XM_041412849.1 24953030 2 1157871 1158252 Onychostruthus taczanowskii 356909 TTG|GTATGTGGCT...AGCATCTTGCTA/GCTAGGTTAACA...CTCAG|CTC 2 1 8.659
137151310 GT-AG 0 0.0001274618166951 905 rna-XM_041412849.1 24953030 3 1158357 1159261 Onychostruthus taczanowskii 356909 GGT|GTAAGTGTCT...GTTTCCTTCACA/GTTTCCTTCACA...TGCAG|TCT 1 1 11.421
137151311 GT-AG 0 1.000000099473604e-05 790 rna-XM_041412849.1 24953030 4 1159525 1160314 Onychostruthus taczanowskii 356909 CTG|GTGAGTGACA...CCTGCCTGGACC/AGCTGGTTGACA...CACAG|ATC 0 1 18.406
137151312 GT-AG 0 1.000000099473604e-05 14422 rna-XM_041412849.1 24953030 5 1160383 1174804 Onychostruthus taczanowskii 356909 GAG|GTGAGTCCAG...CCTGCCTTGTCC/TTGTGCTTCACA...CTCAG|ATA 2 1 20.212
137151313 GT-AG 0 1.000000099473604e-05 3090 rna-XM_041412849.1 24953030 6 1174993 1178082 Onychostruthus taczanowskii 356909 GTG|GTGAGTCCCT...CACCCCTCATTT/CCACCCCTCATT...TCTAG|GAG 1 1 25.206
137151314 GT-AG 0 6.117294468308475e-05 836 rna-XM_041412849.1 24953030 7 1178734 1179569 Onychostruthus taczanowskii 356909 CAG|GTAAGCCTTG...TTTTCCTTTTTT/AACTTTGTAAAT...TACAG|CTT 1 1 42.497
137154329 GT-AG 0 1.000000099473604e-05 17086 rna-XM_041412849.1 24953030 1 1140666 1157751 Onychostruthus taczanowskii 356909 GAG|GTGAGTCAGC...CCTTCCTTCATT/CCTTCCTTCATT...TTTAG|AAC   0 5.578

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);