WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 24462894

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
133657979	GT-AG	0	1.000000099473604e-05	813	rna-XM_004391581.1 24462894	2	17377185	17377997	Odobenus rosmarus 9707	AGT\|GTGAGTATTC...TTTTTCTTTGTT/CTTTGTTTTATA...CGTAG\|ATA	2	1	28.571
133657980	GT-AG	0	1.000000099473604e-05	120	rna-XM_004391581.1 24462894	3	17378052	17378171	Odobenus rosmarus 9707	AAG\|GTAAAGCCGA...TGTACTTTAACT/TGTACTTTAACT...TCCAG\|GAA	2	1	34.328
133657981	GT-AG	0	0.0001907014480123	433	rna-XM_004391581.1 24462894	4	17378205	17378637	Odobenus rosmarus 9707	AAG\|GTAACTCGAT...ATGTCATTATTT/CATGTCATTATT...TCAAG\|TAT	2	1	37.846
133657982	GT-AG	0	1.000000099473604e-05	6290	rna-XM_004391581.1 24462894	5	17378706	17384995	Odobenus rosmarus 9707	TAG\|GTAAGAAGGG...AGATTTTTAAAT/TTTTGTTTTATC...CCCAG\|CTC	1	1	45.096
133657983	GT-AG	0	6.728217226075416e-05	3485	rna-XM_004391581.1 24462894	6	17385124	17388608	Odobenus rosmarus 9707	CAG\|GTACTTCATT...TTGTCATTATCT/TCTTTTCTAAAT...CTTAG\|CTC	0	1	58.742
133657984	GT-AG	1	99.9998541896827	2252	rna-XM_004391581.1 24462894	7	17388787	17391038	Odobenus rosmarus 9707	TCT\|GTATCCTTTG...CCTCCCTTGACT/CCAGTTTTAATG...CTCAG\|ATT	1	1	77.719
133658042	GT-AG	0	0.0477053943712938	51963	rna-XM_004391581.1 24462894	1	17325132	17377094	Odobenus rosmarus 9707	CGG\|GTAACTATTA...TTTGCCTTAGTT/TAGTTATTAATG...TTCAG\|TGG		0	20.043

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);