introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 24462873

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
133657863 GT-AG 0 1.1350216233966643e-05 3166 rna-XM_004391484.1 24462873 1 2529620 2532785 Odobenus rosmarus 9707 CAG|GTAGGCCTGG...TCTCTTTTGTCC/TTCATTATTAGT...TTCAG|GTT 0 1 1.067
133657864 GT-AG 0 1.000000099473604e-05 1504 rna-XM_004391484.1 24462873 2 2532888 2534391 Odobenus rosmarus 9707 AAG|GTAATGACAC...CGCCCTTTAAAT/CTCACTCTGAAT...GCTAG|ATT 0 1 10.133
133657865 GT-AG 0 1.000000099473604e-05 522 rna-XM_004391484.1 24462873 3 2534534 2535055 Odobenus rosmarus 9707 CAG|GTAAGGAGGA...TGCTCCCTATTC/TGTCTTTGCATT...CCCAG|GTG 1 1 22.756
133657866 GT-AG 0 1.000000099473604e-05 4905 rna-XM_004391484.1 24462873 4 2535144 2540048 Odobenus rosmarus 9707 AAG|GTTAGTATCT...CCTTTTTTATTT/TCCTTTTTTATT...TTTAG|AGT 2 1 30.578
133657867 GT-AG 0 1.000000099473604e-05 151 rna-XM_004391484.1 24462873 5 2540269 2540419 Odobenus rosmarus 9707 AAG|GTAAGAGATT...ATTTCCTTGACA/ATTTCCTTGACA...GTTAG|GTG 0 1 50.133
133657868 GT-AG 0 1.000000099473604e-05 844 rna-XM_004391484.1 24462873 6 2540681 2541524 Odobenus rosmarus 9707 ATG|GTAAGTGTGT...ATATTCTCAGCA/AATGCACTGACC...TGCAG|AGA 0 1 73.333
133657869 GT-AG 0 1.000000099473604e-05 2699 rna-XM_004391484.1 24462873 7 2541661 2544359 Odobenus rosmarus 9707 GAG|GTAATTCAGT...CATACTGTAAAG/AGATGTATGATT...TTTAG|GAT 1 1 85.422
133657870 GT-AG 0 0.0007040088128743 136 rna-XM_004391484.1 24462873 8 2544499 2544634 Odobenus rosmarus 9707 GAG|GTAAGCTTCC...GTGGTCTTAAAA/AACCTGTTTATT...TACAG|CAT 2 1 97.778

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);