WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 24462868

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
133657827	GT-AG	1.000000099473604e-05	759	rna-XM_004391482.2 24462868	1	2495575	2496333	Odobenus rosmarus 9707	AAA\|GTAAGAAAAT...TATCTGTTAATT/TATCTGTTAATT...CTCAG\|GTT	0	1	1.575
133657828	GT-AG	1.000000099473604e-05	1053	rna-XM_004391482.2 24462868	2	2496436	2497488	Odobenus rosmarus 9707	CAG\|GTAAGTGGGG...CAGGCCTCAAGT/AATGATATGACA...TGTAG\|ATA	0	1	10.499
133657829	GT-AG	0.0009702052326053	1554	rna-XM_004391482.2 24462868	3	2497631	2499184	Odobenus rosmarus 9707	CAG\|GTATGTTCTT...AACTTTTTACAA/CTGTATCTTAGG...TCCAG\|GTG	1	1	22.922
133657830	GT-AG	0.0003257718408822	1902	rna-XM_004391482.2 24462868	4	2499273	2501174	Odobenus rosmarus 9707	CAG\|GTAAGCTCTA...TTTTTTTTAATT/TTTTTTTTAATT...TCTAG\|TCT	2	1	30.621
133657831	GT-AG	1.000000099473604e-05	3847	rna-XM_004391482.2 24462868	5	2501407	2505253	Odobenus rosmarus 9707	AAG\|GTAAAAGTGG...CTTCCTTTAAAA/TAATTTATAATT...TGCAG\|GTC	0	1	50.919
133657832	GT-AG	0.0009316668587279	3923	rna-XM_004391482.2 24462868	6	2505515	2509437	Odobenus rosmarus 9707	ATG\|GTATGTCTAT...TTCTGTTTGACC/TTTCTACTTATT...TCCAG\|AGA	0	1	73.753
133657833	GT-AG	1.000000099473604e-05	461	rna-XM_004391482.2 24462868	7	2509574	2510034	Odobenus rosmarus 9707	GTG\|GTCAGTTTTT...ATGTCTTTACTT/CATGTCTTTACT...TACAG\|GTT	1	1	85.652
133657834	GT-AG	1.943411765057351e-05	2026	rna-XM_004391482.2 24462868	8	2510174	2512199	Odobenus rosmarus 9707	AAG\|GTAAATTAAC...ATTGTCTTATTA/TATTGTCTTATT...AACAG\|CAT	2	1	97.813

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);