WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 24419450

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
133391669	GT-AG	0	3.356851536706509e-05	83981	rna-XM_014925533.1 24419450	1	226104	310084	Octopus bimaculoides 37653	GCG\|GTAAGTATTA...ATGATTTTAATT/ATGATTTTAATT...TTCAG\|TTG	1	1	11.164
133391670	GT-AG	0	1.000000099473604e-05	12433	rna-XM_014925533.1 24419450	2	213612	226044	Octopus bimaculoides 37653	CAG\|GTAAGTGTCT...TTCTTTTTACAT/ATTCTTTTTACA...TTCAG\|GCC	0	1	20.574
133391671	GT-AG	0	7.237691262236849e-05	14218	rna-XM_014925533.1 24419450	3	199340	213557	Octopus bimaculoides 37653	ACT\|GTAAGTTAAC...ATATTTTTCTCT/TACATACACACA...TTCAG\|ATA	0	1	29.187
133391672	GT-AG	0	1.127771326947105e-05	562	rna-XM_014925533.1 24419450	4	198672	199233	Octopus bimaculoides 37653	CAA\|GTAAGTACTA...GTGTGCTTAACA/TATTATTTAATT...TACAG\|ATG	1	1	46.093
133391673	GT-AG	0	1.000000099473604e-05	5457	rna-XM_014925533.1 24419450	5	193103	198559	Octopus bimaculoides 37653	GAG\|GTAAAAGACA...ACTTTTTTAATT/ATTTTATTTATT...TTAAG\|GCA	2	1	63.955
133391674	GT-AG	0	1.000000099473604e-05	1262	rna-XM_014925533.1 24419450	6	191747	193008	Octopus bimaculoides 37653	CAG\|GTATGGAGTT...CCATCTTTCATG/CCATCTTTCATG...TTCAG\|CTG	0	1	78.947
133391675	GT-AG	1	99.24971749619196	39895	rna-XM_014925533.1 24419450	7	151788	191682	Octopus bimaculoides 37653	AAA\|GTATCCTTGC...TTTTCCTTGACC/TTTTCCTTGACC...TCCAG\|ATA	1	1	89.155

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);