WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 24215968

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
132129562	GT-AG	0.0211393213243801	102	rna-XM_031618174.1 24215968	2	26107502	26107603	Nymphaea colorata 210225	GAG\|GTATTCCTTC...AATTTTTTCACA/AATTTTTTCACA...TCCAG\|GTT	0	1	79.861
132129563	GT-AG	1.000000099473604e-05	1219	rna-XM_031618174.1 24215968	3	26107685	26108903	Nymphaea colorata 210225	CAG\|GTAAGACTCC...CGAATCTTGATG/ATGTAATTAACT...AACAG\|ATT	0	1	81.615
132129564	GT-AG	1.000000099473604e-05	94	rna-XM_031618174.1 24215968	4	26109057	26109150	Nymphaea colorata 210225	CTG\|GTTAGTGTGT...GTTTATTTATTC/TGTTTATTTATT...TTTAG\|ACC	0	1	84.929
132129565	GT-AG	0.0001319426803635	92	rna-XM_031618174.1 24215968	5	26109315	26109406	Nymphaea colorata 210225	CAG\|GTGACTTTGA...TGTTTTTTACCT/ATGTTTTTTACC...TCAAG\|GCT	2	1	88.48
132129566	GT-AG	1.000000099473604e-05	189	rna-XM_031618174.1 24215968	6	26109555	26109743	Nymphaea colorata 210225	AAG\|GTAAGGTTCT...GTACAATTATCT/CTGTCATTCAAA...CCTAG\|GTT	0	1	91.685
132129567	GT-AG	0.007901927780892	79	rna-XM_031618174.1 24215968	7	26109867	26109945	Nymphaea colorata 210225	AAG\|GTACTCTACT...GTAACCTTATTT/GTTTTCCTCAGT...TGCAG\|GTT	0	1	94.348
132129568	GT-AG	0.0016389220777167	97	rna-XM_031618174.1 24215968	8	26110034	26110130	Nymphaea colorata 210225	TCG\|GTATGTGTAC...AGCTTCTTATTT/GAGCTTCTTATT...TGCAG\|GTG	1	1	96.254
132142816	GT-AG	1.000000099473604e-05	227	rna-XM_031618174.1 24215968	1	26103721	26103947	Nymphaea colorata 210225	AAG\|GTGAGCCACT...TGTTTCTTACTT/CTGTTTCTTACT...ATTAG\|GGA		0	6.778

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);