WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 23959261

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
130299716	GT-AG	0.0001840881799405	1677	rna-gnl\|WGS:WBNA\|NOTNIG_R04427_mrna 23959261	1	6956278	6957954	Nothocercus nigrocapillus 1977171	CAG\|GTAAATATTT...TTTTCTTTAACC/TTTTCTTTAACC...TTCAG\|CCT	0	1	13.576
130299717	GT-AG	1.000000099473604e-05	108	rna-gnl\|WGS:WBNA\|NOTNIG_R04427_mrna 23959261	2	6955948	6956055	Nothocercus nigrocapillus 1977171	GAA\|GTAAGTGATT...TCATGTTTATTA/ATCATGTTTATT...TGCAG\|ATT	0	1	38.079
130299718	GT-AG	7.082431048373768e-05	1393	rna-gnl\|WGS:WBNA\|NOTNIG_R04427_mrna 23959261	3	6954458	6955850	Nothocercus nigrocapillus 1977171	AAG\|GTAACTGGCT...CTTTTGTTATTA/TCTTTTGTTATT...TTTAG\|AAA	1	1	48.786
130299719	GT-AG	1.000000099473604e-05	1661	rna-gnl\|WGS:WBNA\|NOTNIG_R04427_mrna 23959261	4	6952731	6954391	Nothocercus nigrocapillus 1977171	AGG\|GTAAGCAACT...TTTGTTTTCTCT/ATATGTTTCAAG...CCTAG\|TTT	1	1	56.071
130299720	GT-AG	2.829311822633643e-05	1310	rna-gnl\|WGS:WBNA\|NOTNIG_R04427_mrna 23959261	5	6951268	6952577	Nothocercus nigrocapillus 1977171	CAG\|GTTTGTCTCA...TTTTCCTGATTT/CTTTTCCTGATT...CCTAG\|GTG	1	1	72.958
130299721	GT-AG	1.000000099473604e-05	1250	rna-gnl\|WGS:WBNA\|NOTNIG_R04427_mrna 23959261	6	6949920	6951169	Nothocercus nigrocapillus 1977171	GTG\|GTAAGAAATT...TATCTCTTCTTT/GTAACATTAAGT...TCTAG\|AGC	0	1	83.775
130299722	GT-AG	1.1784598431418847e-05	557	rna-gnl\|WGS:WBNA\|NOTNIG_R04427_mrna 23959261	7	6949324	6949880	Nothocercus nigrocapillus 1977171	CAT\|GTAAGTGCTC...TGGTTCTTATTT/GTGGTTCTTATT...TTTAG\|CAG	0	1	88.079

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);