introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 23897290

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
129808434 GT-AG 0 1.000000099473604e-05 74386 rna-XM_026665090.1 23897290 1 14440988 14515373 Notechis scutatus 8663 AAG|GTGGGATGAT...TTGCTCTAAATT/TAAATTCTAATT...TGCAG|GTA 1 1 61.943
129808435 GT-AG 0 1.000000099473604e-05 3109 rna-XM_026665090.1 23897290 2 14437735 14440843 Notechis scutatus 8663 ACA|GTGAGTATTA...AATATTTTATTT/ATTTGTTTTATC...TCTAG|CTG 1 1 67.385
129808436 GC-AG 0 1.000000099473604e-05 814 rna-XM_026665090.1 23897290 3 14436783 14437596 Notechis scutatus 8663 CAG|GCAAGTGTGA...TATACATTATCA/AATAAACTTACT...TGCAG|AGG 1 1 72.6
129808437 GT-AG 0 1.000000099473604e-05 11589 rna-XM_026665090.1 23897290 4 14425024 14436612 Notechis scutatus 8663 CAG|GTCAGACCTA...TAATTCTAAATA/TTTGCTCTAATT...TGCAG|GGA 0 1 79.025
129808438 GT-AG 0 6.19989083653637e-05 1714 rna-XM_026665090.1 23897290 5 14423216 14424929 Notechis scutatus 8663 CAG|GTAATTTTTC...CTGATTTTAGTC/TTTAGTCTCATC...TCTAG|TTC 1 1 82.577
129808439 GT-AG 0 1.000000099473604e-05 4864 rna-XM_026665090.1 23897290 6 14418286 14423149 Notechis scutatus 8663 CAG|GTAAATATGC...TTTTTCTTTTTT/TTGGATTTCAAT...TCCAG|CTG 1 1 85.072
129808440 GT-AG 0 2.191017521186152e-05 4233 rna-XM_026665090.1 23897290 7 14413868 14418100 Notechis scutatus 8663 AAG|GTATGAAAAG...TATCTTTTAACG/TTATTATTAATT...TATAG|ATC 0 1 92.063

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);