WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 23897270

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
129808104	GT-AG	0.848609515406381	40111	rna-XM_026668962.1 23897270	1	1566754	1606864	Notechis scutatus 8663	CAA\|GTAACTTTTT...GTTGCTTTAACA/TTTATGTTCATT...TCCAG\|GTA	1	1	57.461
129808105	GT-AG	0.0003836193495012	7800	rna-XM_026668962.1 23897270	2	1607020	1614819	Notechis scutatus 8663	AAG\|GTATTTATTA...ATTTCCATGTTT/AATAGATTCATC...TTTAG\|GTT	0	1	62.612
129808106	GT-AG	0.01414447782901	4938	rna-XM_026668962.1 23897270	3	1614965	1619902	Notechis scutatus 8663	TTG\|GTATGTTTAG...GTTCTCTTCACT/GTTCTCTTCACT...TCCAG\|GAA	1	1	67.431
129808107	GT-AG	0.006149422821696	2730	rna-XM_026668962.1 23897270	4	1620110	1622839	Notechis scutatus 8663	TTG\|GTATGTTGGG...GGTTTCTTGTTT/TGGTTTCTTGTT...TATAG\|GTC	1	1	74.31
129808108	GT-AG	1.000000099473604e-05	2544	rna-XM_026668962.1 23897270	5	1623055	1625598	Notechis scutatus 8663	CAG\|GTAAATCTAA...TTCTTCTTGTTT/AGCTTCTTCAGC...CTCAG\|ATG	0	1	81.456
129808109	GT-AG	9.4362217685998e-05	3123	rna-XM_026668962.1 23897270	6	1625730	1628852	Notechis scutatus 8663	TAG\|GTAAGTTTTA...CTTTTTTTAAAA/CTTTTTTTAAAA...TGTAG\|CTT	2	1	85.809
129808110	GT-AG	0.2443044556660341	893	rna-XM_026668962.1 23897270	7	1628981	1629873	Notechis scutatus 8663	CAG\|GTACCCTAAT...AGACTCTTAAAA/AAAATTCTAATT...TCCAG\|GTC	1	1	90.063
129808111	GT-AG	1.000000099473604e-05	4065	rna-XM_026668962.1 23897270	8	1629992	1634056	Notechis scutatus 8663	CAG\|GTAAAATAAA...TTTCTTCTAATT/TTTCTTCTAATT...TCTAG\|ATA	2	1	93.985

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);