WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 23617104

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
128510893	GT-AG	0.0896886950145491	2445	rna-XM_019380211.1 23617104	1	22535240	22537684	Nicotiana attenuata 49451	CAG\|GTCTCTTTCG...TCTTTTTTGGCC/TATGATCTGACT...AACAG\|GTT	0	1	6.911
128510894	GT-AG	4.542704847549532e-05	105	rna-XM_019380211.1 23617104	2	22538129	22538233	Nicotiana attenuata 49451	CAG\|GTAAACATCT...GTATGTTTGATG/GTATGTTTGATG...GGCAG\|ATC	0	1	21.951
128510895	GT-AG	0.0020496192731513	1019	rna-XM_019380211.1 23617104	3	22538678	22539696	Nicotiana attenuata 49451	ATG\|GTATATTCTA...ATTTTCCTGCCA/TGAGAACTGAAT...TGCAG\|GTT	0	1	36.992
128510896	GT-AG	0.0001405702561249	102	rna-XM_019380211.1 23617104	4	22539943	22540044	Nicotiana attenuata 49451	GCT\|GTGCGTATCT...ATTCTCTTAAAT/ATGATTCTGATA...AATAG\|GTG	0	1	45.325
128510897	GT-AG	1.000000099473604e-05	84	rna-XM_019380211.1 23617104	5	22540840	22540923	Nicotiana attenuata 49451	AAG\|GTTGTTATCA...TGCTTCTGAATA/CATGTATTGATG...TCTAG\|ATA	0	1	72.256
128510898	GT-AG	1.000000099473604e-05	2495	rna-XM_019380211.1 23617104	6	22541103	22543597	Nicotiana attenuata 49451	TAG\|GTAATGCAAT...TGAGTCTTTTCT/ATAATGTTGAGT...TTCAG\|CTC	2	1	78.32
128510899	GT-AG	1.000000099473604e-05	88	rna-XM_019380211.1 23617104	7	22543675	22543762	Nicotiana attenuata 49451	CTG\|GTAAGACTGT...TGTTTTGTGATT/TTTTGTCTGACA...TTCAG\|GGT	1	1	80.928
128510900	GT-AG	1.000000099473604e-05	347	rna-XM_019380211.1 23617104	8	22544321	22544667	Nicotiana attenuata 49451	AAG\|GTGAGTGAGA...TTATCTTTGGTT/CTGTATGTAATG...TGCAG\|GTT	1	1	99.831

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);