WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 23617051

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
128510278	GT-AG	1.000000099473604e-05	683	rna-XM_019390493.1 23617051	1	44850895	44851577	Nicotiana attenuata 49451	GAG\|GTTAAGTGAT...TATTACTTAGTT/TTTGATCTCAAT...TACAG\|GCA	0	1	37.312
128510279	GT-AG	0.1052849546102588	687	rna-XM_019390493.1 23617051	2	44852295	44852981	Nicotiana attenuata 49451	GAG\|GTATCTGCTA...GTTGGCTTGACT/GTTGGCTTGACT...GGCAG\|GTT	0	1	55.255
128510280	GT-AG	4.495616663825839e-05	558	rna-XM_019390493.1 23617051	3	44853480	44854037	Nicotiana attenuata 49451	CAG\|GTATGGCTTG...TTTTCCCTATTA/CTGCTACTGACA...TCCAG\|GAG	0	1	67.718
128510281	GT-AG	1.000000099473604e-05	94	rna-XM_019390493.1 23617051	4	44854130	44854223	Nicotiana attenuata 49451	CTG\|GTGAGTCCAT...CAATTCTTAATC/CAATTCTTAATC...AAAAG\|TTA	2	1	70.02
128510282	GT-AG	7.945144371075589e-05	96	rna-XM_019390493.1 23617051	5	44854312	44854407	Nicotiana attenuata 49451	CAG\|GTACATCCTT...TTATCTTTTGCT/CTTTTGCTAACT...CTCAG\|AGA	0	1	72.222
128510283	GT-AG	1.000000099473604e-05	83	rna-XM_019390493.1 23617051	6	44854523	44854605	Nicotiana attenuata 49451	AAG\|GTTGAATCTC...TTCCCCTTTTTT/ATATATCTGACT...TGCAG\|GTA	1	1	75.1
128510284	GT-AG	6.373843677565393e-05	71	rna-XM_019390493.1 23617051	7	44854733	44854803	Nicotiana attenuata 49451	ACG\|GTAAGCATGC...TAACTTTTACTT/CTAACTTTTACT...GCCAG\|AGG	2	1	78.278
128510285	GT-AG	0.0906304543655951	535	rna-XM_019390493.1 23617051	8	44854979	44855513	Nicotiana attenuata 49451	CAG\|GTATCAATTC...CTTGTTTTGATA/CTTGTTTTGATA...ATCAG\|GAC	0	1	82.658

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);