WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 23404085

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
127495005	GT-AG	0.0004052624240692	3184	rna-XM_024759155.1 23404085	1	13820	17003	Neophocaena asiaeorientalis 189058	CAG\|GTATGGTACC...CCTTCTTTAACA/CCTTCTTTAACA...TTCAG\|GTT	0	1	36.502
127495006	GT-AG	0.0003988132929335	1063	rna-XM_024759155.1 23404085	2	12604	13666	Neophocaena asiaeorientalis 189058	TCA\|GTAAGTTCTG...TCAGTTTTAGTG/TTTCAGTTTATT...ATTAG\|AGT	0	1	42.488
127495007	GT-AG	1.000000099473604e-05	5341	rna-XM_024759155.1 23404085	3	7176	12516	Neophocaena asiaeorientalis 189058	AAA\|GTTAGTGTCT...TTTTCTTTATAC/TTTTTCTTTATA...TACAG\|GTT	0	1	45.892
127495008	GT-AG	0.0005116054871784	2361	rna-XM_024759155.1 23404085	4	4686	7046	Neophocaena asiaeorientalis 189058	GAG\|GTAAACTTGA...TTTTTTGTAATC/TTTTTTGTAATC...ATAAG\|GAA	0	1	50.939
127495009	GT-AG	1.000000099473604e-05	467	rna-XM_024759155.1 23404085	5	4055	4521	Neophocaena asiaeorientalis 189058	GGT\|GTAAGTAAAT...TTGATTTTAAAG/TTTGATTTTAAA...TACAG\|GTC	2	1	57.355
127495010	GT-AG	3.3067241121769565e-05	120	rna-XM_024759155.1 23404085	6	3498	3617	Neophocaena asiaeorientalis 189058	TAG\|GTAATTTTTG...CAGAGTTTAATG/CAGAGTTTAATG...CATAG\|AAC	1	1	74.452
127495011	GT-AG	1.000000099473604e-05	694	rna-XM_024759155.1 23404085	7	2566	3259	Neophocaena asiaeorientalis 189058	CAG\|GTAATGCACG...CTGTCCTAAGTT/CCATTTTTCACT...TCCAG\|GAA	2	1	83.764

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);