WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 23200006

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
126230806	GT-AG	1.000000099473604e-05	160	rna-gnl\|WGS:MCOG\|LY90DRAFT_mRNA696663 23200006	1	838487	838646	Neocallimastix californiae 1754190	AAC\|GTAAGTAAAC...AATATTTTATTT/TTTTATTTAATA...AATAG\|ACG	2	1	6.444
126230807	GT-AG	1.000000099473604e-05	159	rna-gnl\|WGS:MCOG\|LY90DRAFT_mRNA696663 23200006	2	838756	838914	Neocallimastix californiae 1754190	GAA\|GTAATAAAGA...TTATCCATAATT/TAATTTTTCATT...TAAAG\|AAA	0	1	12.83
126230808	GT-AG	1.0345344296786294e-05	178	rna-gnl\|WGS:MCOG\|LY90DRAFT_mRNA696663 23200006	3	839179	839356	Neocallimastix californiae 1754190	AAA\|GTAATAATTA...GTAATTTTAATA/GTAATTTTAATA...TTAAG\|GAA	0	1	28.295
126230809	GT-AG	0.0522303449266919	283	rna-gnl\|WGS:MCOG\|LY90DRAFT_mRNA696663 23200006	4	839573	839855	Neocallimastix californiae 1754190	CAA\|GTATATTATT...TTATTATTAATA/TTATTATTAATA...TAAAG\|GAA	0	1	40.949
126230810	GT-AG	0.0002095409132848	176	rna-gnl\|WGS:MCOG\|LY90DRAFT_mRNA696663 23200006	5	840303	840478	Neocallimastix californiae 1754190	AAA\|GTAATTTATA...ATACTTTTATTA/TTATTATTCATA...TATAG\|AGA	0	1	67.135
126230811	GT-AG	1.000000099473604e-05	188	rna-gnl\|WGS:MCOG\|LY90DRAFT_mRNA696663 23200006	6	840644	840831	Neocallimastix californiae 1754190	AAA\|GTAAAAATTT...TATGTATAAATA/ATATATATAATA...TTTAG\|GAA	0	1	76.801
126230812	GT-AG	0.0548369282478614	210	rna-gnl\|WGS:MCOG\|LY90DRAFT_mRNA696663 23200006	7	841072	841281	Neocallimastix californiae 1754190	ATG\|GTATATATTA...TTTTTCTTACTA/TTTTTTCTTACT...ATTAG\|ATT	0	1	90.861

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);