introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 23148267

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
125872054 GT-AG 0 1.000000099473604e-05 379 rna-XM_037675220.1 23148267 2 13909316 13909694 Nematolebias whitei 451745 CAG|GTGGGCTCCT...TTTGCTTTAATT/TTTGCTTTAATT...GACAG|GAA 0 1 7.416
125872055 GT-AG 0 1.000000099473604e-05 2111 rna-XM_037675220.1 23148267 3 13909836 13911946 Nematolebias whitei 451745 GAA|GTAAGAGTTC...TTTTTCTTGTCT/GTGAATCTCAAA...TACAG|AAC 0 1 10.856
125872056 GT-AG 0 2.6891435637765215e-05 4660 rna-XM_037675220.1 23148267 4 13912017 13916676 Nematolebias whitei 451745 AAG|GTTTGATTCT...AGAATCTTGACC/TTTTGTTTGATT...TTCAG|AAG 1 1 12.564
125872057 GT-AG 0 1.000000099473604e-05 114 rna-XM_037675220.1 23148267 5 13916762 13916875 Nematolebias whitei 451745 AAT|GTAAGATTCA...GTTGTTTAAACT/TTTAAATTAAAT...TGCAG|GTA 2 1 14.638
125872058 GT-AG 0 1.0887534315993456e-05 129 rna-XM_037675220.1 23148267 6 13920249 13920377 Nematolebias whitei 451745 GAG|GTAAGCACTT...CACTTCTTGTTT/GGTCTTCTGAAA...TCTAG|TTT 0 1 96.926
125872059 GT-AG 0 1.000000099473604e-05 2688 rna-XM_037675220.1 23148267 7 13920487 13923174 Nematolebias whitei 451745 CAG|GTAAATCCAT...TAAGTTTTGCAA/AACAATCTAACT...TCCAG|GAA 1 1 99.585
125882304 GT-AG 0 1.000000099473604e-05 4355 rna-XM_037675220.1 23148267 1 13904385 13908739 Nematolebias whitei 451745 CAG|GTAAGTAAAG...ATTTTTTTAAAC/ATTTTTTTAAAC...TTCAG|GTT   0 1.635

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);