WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 23121140

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
125746506	GT-AG	3.8322908955502496e-05	2204	rna-XM_010252599.2 23121140	4	11418890	11421093	Nelumbo nucifera 4432	AAG\|GTTTGTTGCA...TTTTCTATAAAT/TAAATATTCATA...GCCAG\|CTT	0	1	45.444
125746507	GT-AG	1.000000099473604e-05	124	rna-XM_010252599.2 23121140	5	11418672	11418795	Nelumbo nucifera 4432	ATG\|GTAGTACTGA...TTATACTTAATG/GTTATACTTAAT...TTCAG\|GAA	1	1	48.94
125746508	GT-AG	1.000000099473604e-05	7448	rna-XM_010252599.2 23121140	6	11411186	11418633	Nelumbo nucifera 4432	GAG\|GTTAGTAATT...AATTTCTAATTC/AAATTTCTAATT...TGTAG\|GTT	0	1	50.353
125746509	GT-AG	4.135847892715624e-05	18302	rna-XM_010252599.2 23121140	7	11392737	11411038	Nelumbo nucifera 4432	AAG\|GTAACTCAAA...TGTTTCTCATCA/CTGTTTCTCATC...TTCAG\|GGT	0	1	55.82
125746510	GT-AG	1.000000099473604e-05	2866	rna-XM_010252599.2 23121140	8	11389771	11392636	Nelumbo nucifera 4432	ATG\|GTAATTCACT...TGTTTCCTATTT/AATATATTTATG...TACAG\|TGC	1	1	59.539
125746511	GT-AG	3.3556579673280204e-05	266	rna-XM_010252599.2 23121140	9	11388564	11388829	Nelumbo nucifera 4432	AAG\|GTATTAATGC...TTGTATTTGAAC/TTGTATTTGAAC...TGCAG\|GTA	0	1	94.533
125748244	GT-AG	1.000000099473604e-05	261	rna-XM_010252599.2 23121140	1	11432008	11432268	Nelumbo nucifera 4432	CCG\|GTTCGTGTTC...AGATTTTTATAT/TATATATTAATT...TACAG\|TGC		0	13.871
125748245	GT-AG	4.826447064436773e-05	9831	rna-XM_010252599.2 23121140	2	11422123	11431953	Nelumbo nucifera 4432	GAG\|GTTTGTCTTC...TCTTTCTGAATT/AATTTTCTGATA...TGCAG\|GTT		0	15.88

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);