WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 23121120

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
125746369	GT-AG	1.000000099473604e-05	56	rna-XM_019196839.1 23121120	1	6086174	6086229	Nelumbo nucifera 4432	CAT\|GTTCGAGTCT...GCTTGCGTGATC/CTAAGGCTCAGC...TTGAG\|TGT	1	1	0.819
125746370	GT-AG	1.000000099473604e-05	99	rna-XM_019196839.1 23121120	2	6085011	6085109	Nelumbo nucifera 4432	AAG\|GTGAAATTAA...GTCGTCTAAATT/ATTTAGTTCATG...CGCAG\|GAG	0	1	40.447
125746371	GT-AG	1.000000099473604e-05	6845	rna-XM_019196839.1 23121120	3	6078028	6084872	Nelumbo nucifera 4432	AAG\|GTAAAGTTTT...ATATCATTGACT/ATATCATTGACT...TTCAG\|TTG	0	1	45.587
125746372	GT-AG	0.0002905709487109	92	rna-XM_019196839.1 23121120	4	6077831	6077922	Nelumbo nucifera 4432	AAG\|GTATAATACT...ATGACCTTTGCT/TTAAATGTAACA...GACAG\|GCA	0	1	49.497
125746373	GT-AG	0.0027103019629225	1691	rna-XM_019196839.1 23121120	5	6075954	6077644	Nelumbo nucifera 4432	CAG\|GTTTTCTTAT...TACTCCTGGATG/TGCTTTTTCATG...AGCAG\|GCC	0	1	56.425
125746374	GT-AG	8.453207902788643e-05	5494	rna-XM_019196839.1 23121120	6	6070285	6075778	Nelumbo nucifera 4432	CAG\|GTTTCAATAG...TGATATTTGAAT/CATAGATTAATG...TTCAG\|GAG	1	1	62.942
125746375	GT-AG	0.0001878211212129	5829	rna-XM_019196839.1 23121120	7	6064211	6070039	Nelumbo nucifera 4432	CGG\|GTATGTCTAA...CTCATGTTGATT/CTCATGTTGATT...TACAG\|GCC	0	1	72.067
125746376	GT-AG	0.0002346015881009	160	rna-XM_019196839.1 23121120	8	6063881	6064040	Nelumbo nucifera 4432	CAG\|GTAAACCTCT...TTGTTTTTGATT/TTGTTTTTGATT...CACAG\|GTA	2	1	78.399

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);