introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
5 rows where transcript_id = 2279672
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Suggested facets: phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240270 | GT-AG | 0 | 1.000000099473604e-05 | 5573 | rna-XM_027997766.1 2279672 | 1 | 1336072 | 1341644 | Aphis gossypii 80765 | CAG|GTAAGTCACG...TAATTTTTGTTA/ATTTTTGTTACA...CGCAG|TTT | 0 | 1 | 8.633 |
12240271 | GT-AG | 0 | 1.000000099473604e-05 | 39420 | rna-XM_027997766.1 2279672 | 2 | 1341705 | 1381124 | Aphis gossypii 80765 | CGG|GTAAGTGCTT...TCGTTCGTATCT/GAGATTGTAATC...TACAG|ATG | 0 | 1 | 13.429 |
12240272 | GT-AG | 0 | 1.000000099473604e-05 | 26006 | rna-XM_027997766.1 2279672 | 3 | 1381179 | 1407184 | Aphis gossypii 80765 | AAG|GTAAAACATT...TTTTTTTTAATA/TTTTTTTTAATA...TTCAG|ACT | 0 | 1 | 17.746 |
12240273 | GT-AG | 0 | 1.000000099473604e-05 | 227 | rna-XM_027997766.1 2279672 | 4 | 1407759 | 1407985 | Aphis gossypii 80765 | GCG|GTAAGTACCA...AGTGTATTAATT/CGTTTGCTAATT...TTTAG|GTT | 1 | 1 | 63.629 |
12240274 | GT-AG | 0 | 1.000000099473604e-05 | 11342 | rna-XM_027997766.1 2279672 | 5 | 1408046 | 1419387 | Aphis gossypii 80765 | CAG|GTAATTTTAT...AATATCATATTA/ATCATATTAAAC...CACAG|GTG | 1 | 1 | 68.425 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);