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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2279668

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240247 GT-AG 0 6.221824564193154e-05 6734 rna-XM_027998380.1 2279668 1 3550553 3557286 Aphis gossypii 80765 CGA|GTAAGTACTT...GTATTTTTAATT/GTATTTTTAATT...TTCAG|AGT 0 1 6.413
12240248 GT-AG 0 1.000000099473604e-05 2615 rna-XM_027998380.1 2279668 2 3557369 3559983 Aphis gossypii 80765 GAG|GTAAGATTCA...TTGTATTTGATT/TTGTATTTGATT...TACAG|GAG 1 1 12.906
12240249 GT-AG 0 0.0093917277571391 92 rna-XM_027998380.1 2279668 3 3560129 3560220 Aphis gossypii 80765 ACA|GTATGTACTA...TATGATTTAATA/TATGATTTAATA...TTTAG|AAA 2 1 24.386
12240250 GT-AG 0 1.000000099473604e-05 6694 rna-XM_027998380.1 2279668 4 3560586 3567279 Aphis gossypii 80765 TAG|GTACGAAATA...ATTTTATTAACA/ATTTTATTAACA...TTTAG|ATC 1 1 53.286
12240251 GT-AG 0 0.000112557989045 88 rna-XM_027998380.1 2279668 5 3567470 3567557 Aphis gossypii 80765 CAG|GTATAATATG...TATTCAATAACT/CAATAACTGATA...TTCAG|CAA 2 1 68.329
12240252 GT-AG 0 0.0463817103728006 935 rna-XM_027998380.1 2279668 6 3567625 3568559 Aphis gossypii 80765 CAG|GTAACTTTTA...TAAATCTTATCT/TTAAATCTTATC...TTTAG|TTG 0 1 73.634
12240253 GT-AG 0 1.000000099473604e-05 81 rna-XM_027998380.1 2279668 7 3568633 3568713 Aphis gossypii 80765 TGG|GTAAGAAAAA...CTATTTTTATTT/GTTTTATTAATT...TTTAG|CAA 1 1 79.414
12240254 GT-AG 0 7.402192872256817e-05 80 rna-XM_027998380.1 2279668 8 3568849 3568928 Aphis gossypii 80765 CTG|GTATAAAATA...TCATTATTAATT/TCATTATTAATT...TTTAG|TAA 1 1 90.103

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 59.631ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)