introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 2279668
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240247 | GT-AG | 0 | 6.221824564193154e-05 | 6734 | rna-XM_027998380.1 2279668 | 1 | 3550553 | 3557286 | Aphis gossypii 80765 | CGA|GTAAGTACTT...GTATTTTTAATT/GTATTTTTAATT...TTCAG|AGT | 0 | 1 | 6.413 |
12240248 | GT-AG | 0 | 1.000000099473604e-05 | 2615 | rna-XM_027998380.1 2279668 | 2 | 3557369 | 3559983 | Aphis gossypii 80765 | GAG|GTAAGATTCA...TTGTATTTGATT/TTGTATTTGATT...TACAG|GAG | 1 | 1 | 12.906 |
12240249 | GT-AG | 0 | 0.0093917277571391 | 92 | rna-XM_027998380.1 2279668 | 3 | 3560129 | 3560220 | Aphis gossypii 80765 | ACA|GTATGTACTA...TATGATTTAATA/TATGATTTAATA...TTTAG|AAA | 2 | 1 | 24.386 |
12240250 | GT-AG | 0 | 1.000000099473604e-05 | 6694 | rna-XM_027998380.1 2279668 | 4 | 3560586 | 3567279 | Aphis gossypii 80765 | TAG|GTACGAAATA...ATTTTATTAACA/ATTTTATTAACA...TTTAG|ATC | 1 | 1 | 53.286 |
12240251 | GT-AG | 0 | 0.000112557989045 | 88 | rna-XM_027998380.1 2279668 | 5 | 3567470 | 3567557 | Aphis gossypii 80765 | CAG|GTATAATATG...TATTCAATAACT/CAATAACTGATA...TTCAG|CAA | 2 | 1 | 68.329 |
12240252 | GT-AG | 0 | 0.0463817103728006 | 935 | rna-XM_027998380.1 2279668 | 6 | 3567625 | 3568559 | Aphis gossypii 80765 | CAG|GTAACTTTTA...TAAATCTTATCT/TTAAATCTTATC...TTTAG|TTG | 0 | 1 | 73.634 |
12240253 | GT-AG | 0 | 1.000000099473604e-05 | 81 | rna-XM_027998380.1 2279668 | 7 | 3568633 | 3568713 | Aphis gossypii 80765 | TGG|GTAAGAAAAA...CTATTTTTATTT/GTTTTATTAATT...TTTAG|CAA | 1 | 1 | 79.414 |
12240254 | GT-AG | 0 | 7.402192872256817e-05 | 80 | rna-XM_027998380.1 2279668 | 8 | 3568849 | 3568928 | Aphis gossypii 80765 | CTG|GTATAAAATA...TCATTATTAATT/TCATTATTAATT...TTTAG|TAA | 1 | 1 | 90.103 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);