introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 2279664
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240228 | GT-AG | 0 | 0.0016841616998821 | 63 | rna-XM_027990391.1 2279664 | 2 | 4366147 | 4366209 | Aphis gossypii 80765 | AAG|GTATGCAAAA...ATTGTTTTATTT/AATTGTTTTATT...TTTAG|ATA | 1 | 1 | 19.201 |
12240229 | GT-AG | 0 | 1.000000099473604e-05 | 876 | rna-XM_027990391.1 2279664 | 3 | 4366704 | 4367579 | Aphis gossypii 80765 | AAG|GTTAGAATGT...TAATTATTAATA/TAATTATTAATA...TATAG|TTT | 0 | 1 | 44.837 |
12240230 | GT-AG | 0 | 0.0778350786381368 | 70 | rna-XM_027990391.1 2279664 | 4 | 4367734 | 4367803 | Aphis gossypii 80765 | CAA|GTATTTATTT...ATTTTTTTAAAT/TAAATTTTAATT...TTCAG|TCG | 1 | 1 | 52.828 |
12240231 | GT-AG | 0 | 0.0051162904643679 | 915 | rna-XM_027990391.1 2279664 | 5 | 4367971 | 4368885 | Aphis gossypii 80765 | GAG|GTATTTATTC...GAATTCTTATAG/TAGTATTTTATT...AATAG|GCT | 0 | 1 | 61.495 |
12240232 | GT-AG | 0 | 0.0008510963927703 | 55 | rna-XM_027990391.1 2279664 | 6 | 4369070 | 4369124 | Aphis gossypii 80765 | ATA|GTAAGTTGTT...TTTTTTTTAACT/TTTTTTTTAACT...TTTAG|CTG | 1 | 1 | 71.043 |
12240612 | GT-AG | 0 | 6.272098152346935e-05 | 645 | rna-XM_027990391.1 2279664 | 1 | 4365299 | 4365943 | Aphis gossypii 80765 | TAG|GTACATCAAA...ATCATTTTGATT/ATCATTTTGATT...ATTAG|ATT | 0 | 9.964 | |
12240613 | GT-AG | 0 | 1.000000099473604e-05 | 340 | rna-XM_027990391.1 2279664 | 7 | 4369303 | 4369642 | Aphis gossypii 80765 | CAG|GTAATTAGGT...ATTGTTTTCATT/ATTGTTTTCATT...TTCAG|TAA | 0 | 80.28 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);