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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 2279661

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Suggested facets: is_minor, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240212 GT-AG 1 96.73626837500748 1242 rna-XM_027980746.1 2279661 1 3628959 3630200 Aphis gossypii 80765 CTG|GTATCCTTTT...TACTCCTTAATT/ATATTATTAATT...ATAAG|GTA 2 1 2.945
12240213 GT-AG 0 1.000000099473604e-05 215 rna-XM_027980746.1 2279661 2 3630328 3630542 Aphis gossypii 80765 CAG|GTTAGTGAAA...TTTTTATTACAC/AATTATATAATT...TACAG|GTG 0 1 12.069
12240214 GT-AG 0 1.000000099473604e-05 179 rna-XM_027980746.1 2279661 3 3630679 3630857 Aphis gossypii 80765 AAG|GTAATATAAT...ATCATATTAATA/TTAATATTTATT...CATAG|GTA 1 1 21.839
12240215 GT-AG 0 1.000000099473604e-05 3728 rna-XM_027980746.1 2279661 4 3631006 3634733 Aphis gossypii 80765 TGG|GTAATTAAAT...AATATTTTGATT/AATATTTTGATT...ATTAG|AAT 2 1 32.471
12240216 GT-AG 0 0.0009719749989131 62 rna-XM_027980746.1 2279661 5 3634834 3634895 Aphis gossypii 80765 ATT|GTAAGTTTAA...TATTTTTTAATA/TTTATTTTCAAT...TTTAG|GCT 0 1 39.655
12240217 GT-AG 0 1.6586835725014616e-05 128 rna-XM_027980746.1 2279661 6 3634988 3635115 Aphis gossypii 80765 TGG|GTAAAGTATA...TTGTTTTTAAAA/TACATTTTTACT...CCTAG|AAA 2 1 46.264
12240218 GT-AG 0 0.0001503149773786 70 rna-XM_027980746.1 2279661 7 3635204 3635273 Aphis gossypii 80765 TTA|GTAAGTTTAA...AAAATTTTAAAT/TATAAATTGATT...TTTAG|GAA 0 1 52.586
12240219 GT-AG 0 1.000000099473604e-05 563 rna-XM_027980746.1 2279661 8 3635598 3636160 Aphis gossypii 80765 GAG|GTACGGTAGA...TTCATTTTAATA/TATTAATTCATT...TTTAG|ATG 0 1 75.862
12240220 GT-AG 0 0.0232492341017195 80 rna-XM_027980746.1 2279661 9 3636390 3636469 Aphis gossypii 80765 CAG|GTATTTATTT...TATGTCTTAATT/TTAATTCTAACA...ATTAG|GTT 1 1 92.313

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 45.985ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)