introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 2279660
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240205 | GT-AG | 0 | 2.045281479497524e-05 | 1968 | rna-XM_027997494.1 2279660 | 1 | 837521 | 839488 | Aphis gossypii 80765 | CAA|GTTAATTTTT...AATATTTTAATA/AATATTTTAATA...TTTAG|GAT | 0 | 1 | 4.506 |
12240206 | GT-AG | 0 | 0.0010216432609039 | 52220 | rna-XM_027997494.1 2279660 | 2 | 785082 | 837301 | Aphis gossypii 80765 | CAG|GTATTTATGA...GATATTTTGAAT/TTATTTTTCATT...TGCAG|TGT | 0 | 1 | 20.172 |
12240207 | GT-AG | 0 | 1.000000099473604e-05 | 33881 | rna-XM_027997494.1 2279660 | 3 | 750669 | 784549 | Aphis gossypii 80765 | ATG|GTGAGTTTGA...TTTTTTTTATAA/TTTTTTTTTATA...TACAG|GCA | 1 | 1 | 58.226 |
12240208 | GT-AG | 0 | 1.000000099473604e-05 | 2448 | rna-XM_027997494.1 2279660 | 4 | 748110 | 750557 | Aphis gossypii 80765 | CAG|GTAAATTGAA...AACGTATTAACA/CTGTGTATTATT...TACAG|GGG | 1 | 1 | 66.166 |
12240209 | GT-AG | 0 | 1.000000099473604e-05 | 2112 | rna-XM_027997494.1 2279660 | 5 | 745871 | 747982 | Aphis gossypii 80765 | CAG|GTAAATATAT...ATTGTTTTAATT/ATTGTTTTAATT...TTTAG|AAA | 2 | 1 | 75.25 |
12240210 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_027997494.1 2279660 | 6 | 745701 | 745779 | Aphis gossypii 80765 | AAG|GTAATAAGCG...TTTTCATTATTA/ATGATTTTCATT...CGCAG|CAT | 0 | 1 | 81.76 |
12240211 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-XM_027997494.1 2279660 | 7 | 745533 | 745619 | Aphis gossypii 80765 | CGG|GTAAGAAACT...GTTTCGTTAATG/ACCGTTTTGATT...TTCAG|TGT | 0 | 1 | 87.554 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);