introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 2279657
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240188 | GT-AG | 0 | 0.1931671394795816 | 63 | rna-XM_027997891.1 2279657 | 1 | 4595360 | 4595422 | Aphis gossypii 80765 | AAG|GTATCATGCT...TTATTCTTACTA/TTTATTCTTACT...TGTAG|ATC | 0 | 1 | 7.627 |
12240189 | GT-AG | 0 | 0.1297067593438587 | 74 | rna-XM_027997891.1 2279657 | 2 | 4595162 | 4595235 | Aphis gossypii 80765 | TTG|GTATCTAAAC...TATTTATTAATC/TATTTATTAATC...TAAAG|GTA | 1 | 1 | 16.384 |
12240190 | GT-AG | 0 | 1.000000099473604e-05 | 195 | rna-XM_027997891.1 2279657 | 3 | 4594852 | 4595046 | Aphis gossypii 80765 | CAT|GTGAGTAGAT...CTAATTTTAATG/TAATTACTAATT...ATTAG|GTA | 2 | 1 | 24.506 |
12240191 | GT-AG | 0 | 0.0005481795591253 | 68 | rna-XM_027997891.1 2279657 | 4 | 4594654 | 4594721 | Aphis gossypii 80765 | AAG|GTAAACTATA...CTTTTTTTAAAT/CTTTTTTTAAAT...TTTAG|ATG | 0 | 1 | 33.686 |
12240192 | GT-AG | 0 | 1.198157996895851 | 79 | rna-XM_027997891.1 2279657 | 5 | 4594378 | 4594456 | Aphis gossypii 80765 | AAA|GTATATTTTA...TATTTTTTATTT/TTTTTATTTACT...ATTAG|AAA | 2 | 1 | 47.599 |
12240193 | GT-AG | 0 | 0.0064411794651612 | 71 | rna-XM_027997891.1 2279657 | 6 | 4594129 | 4594199 | Aphis gossypii 80765 | TAT|GTAATTTTTA...TAAACTTTAATA/AATGTATTTATT...TTTAG|AGT | 0 | 1 | 60.169 |
12240194 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-XM_027997891.1 2279657 | 7 | 4593977 | 4594043 | Aphis gossypii 80765 | CAG|GTTATTAAGT...TAATACTTGACG/TAAATACTGATT...TTTAG|GTT | 1 | 1 | 66.172 |
12240195 | GT-AG | 0 | 1.000000099473604e-05 | 206 | rna-XM_027997891.1 2279657 | 8 | 4593662 | 4593867 | Aphis gossypii 80765 | AAG|GTAAGCATAT...ACCATTTTAAAT/TATTTAGTTATT...TGTAG|GAC | 2 | 1 | 73.87 |
12240196 | GT-AG | 0 | 2.2387670211534715e-05 | 92 | rna-XM_027997891.1 2279657 | 9 | 4593455 | 4593546 | Aphis gossypii 80765 | TCT|GTAAGAATAA...AATTTTTTATTT/AAATTTTTTATT...CACAG|ATG | 0 | 1 | 81.992 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);