introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 2279656
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Suggested facets: score, length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240182 | GT-AG | 0 | 7.002171034383939e-05 | 66 | rna-XM_027998173.1 2279656 | 2 | 4612445 | 4612510 | Aphis gossypii 80765 | AAA|GTAATGTTTT...ATTATCTTAAAT/TATTTACTTATA...TGTAG|GAA | 2 | 1 | 19.578 |
12240183 | GT-AG | 0 | 0.0002465066407098 | 173 | rna-XM_027998173.1 2279656 | 3 | 4612678 | 4612850 | Aphis gossypii 80765 | CAA|GTAAATTTTA...TTTTCTATATTT/TTTTTTTTCATG...TTCAG|GTT | 1 | 1 | 29.367 |
12240184 | GT-AG | 0 | 1.000000099473604e-05 | 470 | rna-XM_027998173.1 2279656 | 4 | 4613123 | 4613592 | Aphis gossypii 80765 | GAG|GTAAGATGTT...AAAATTTTATAA/CAAAATTTTATA...TTAAG|ATT | 0 | 1 | 45.311 |
12240185 | GT-AG | 0 | 0.0087791800703684 | 166 | rna-XM_027998173.1 2279656 | 5 | 4613730 | 4613895 | Aphis gossypii 80765 | CAC|GTATGTATTG...AGCAACTTAATA/TAATAATTAATA...TCTAG|ATT | 2 | 1 | 53.341 |
12240186 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-XM_027998173.1 2279656 | 6 | 4614121 | 4614186 | Aphis gossypii 80765 | AAG|GTAAATAATG...TTTAATTTAATG/ATTTTACTAATA...TCAAG|GTT | 2 | 1 | 66.53 |
12240187 | GT-AG | 0 | 0.0005329646093506 | 58 | rna-XM_027998173.1 2279656 | 7 | 4614403 | 4614460 | Aphis gossypii 80765 | TAA|GTAAGTTTAT...TATACCTTGAAT/TAATTTATAACC...TTTAG|ATT | 2 | 1 | 79.191 |
12240607 | GT-AG | 0 | 0.0681420897883073 | 97 | rna-XM_027998173.1 2279656 | 1 | 4612246 | 4612342 | Aphis gossypii 80765 | AAT|GTATTTTACT...TTACTCTCAACT/TTAATGCTTACT...TTCAG|TGA | 0 | 16.647 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);