introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2279651
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240156 | GT-AG | 0 | 5.885311811008199e-05 | 7338 | rna-XM_027997991.1 2279651 | 1 | 2608578 | 2615915 | Aphis gossypii 80765 | TGG|GTAAGTTTAT...ATTTTTTTAGAT/CTGATTTTTATG...TTTAG|AAA | 1 | 1 | 0.472 |
12240157 | GT-AG | 0 | 1.09505999158525e-05 | 137 | rna-XM_027997991.1 2279651 | 2 | 2608375 | 2608511 | Aphis gossypii 80765 | ACA|GTTAGTTATA...AATTCTTTATTA/TTGTATTTTATT...AATAG|GTG | 1 | 1 | 4.926 |
12240158 | GT-AG | 0 | 0.0089917101402596 | 788 | rna-XM_027997991.1 2279651 | 3 | 2607408 | 2608195 | Aphis gossypii 80765 | CCA|GTATGTTAAT...TTTTTTCTAATA/TTTTTTCTAATA...TGCAG|AAT | 0 | 1 | 17.004 |
12240159 | GT-AG | 0 | 1.000000099473604e-05 | 4000 | rna-XM_027997991.1 2279651 | 4 | 2603174 | 2607173 | Aphis gossypii 80765 | GAA|GTAAGTGTCA...TAATTCTTTATG/TAATTCTTTATG...ATTAG|GGC | 0 | 1 | 32.794 |
12240160 | GT-AG | 0 | 1.000000099473604e-05 | 75 | rna-XM_027997991.1 2279651 | 5 | 2603011 | 2603085 | Aphis gossypii 80765 | CAG|GTAAATATTA...AAAAGTTTAACT/ATATTGTTTACC...ATTAG|GAA | 1 | 1 | 38.731 |
12240161 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-XM_027997991.1 2279651 | 6 | 2602711 | 2602786 | Aphis gossypii 80765 | AAG|GTAAACGTTC...ATCCATTTATTC/CAGGGTTTCATC...TTCAG|AAT | 0 | 1 | 53.846 |
12240162 | GT-AG | 0 | 1.000000099473604e-05 | 278 | rna-XM_027997991.1 2279651 | 7 | 2602277 | 2602554 | Aphis gossypii 80765 | GAA|GTGAGCAGTC...TATACCTAATAT/ATTAAATTCATT...TTTAG|ACC | 0 | 1 | 64.372 |
12240163 | GT-AG | 0 | 3.635733091943428e-05 | 652 | rna-XM_027997991.1 2279651 | 8 | 2601492 | 2602143 | Aphis gossypii 80765 | TAG|GTATAAAATT...TTTCTTTTGAGC/TTTCTTTTGAGC...TTCAG|CTT | 1 | 1 | 73.347 |
12240164 | GT-AG | 0 | 0.0001526856325395 | 60 | rna-XM_027997991.1 2279651 | 9 | 2601193 | 2601252 | Aphis gossypii 80765 | AAT|GTAGTGTACA...TTTTTTTTAACA/TTTTTTTTAACA...TATAG|AAT | 0 | 1 | 89.474 |
12240165 | GT-AG | 0 | 1.000000099473604e-05 | 1082 | rna-XM_027997991.1 2279651 | 10 | 2599969 | 2601050 | Aphis gossypii 80765 | GTG|GTGAGTAATG...CTTTTTTTAATT/CTTTTTTTAATT...TCTAG|ATA | 1 | 1 | 99.055 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);