introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 2279647
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240140 | GT-AG | 0 | 0.000895124080341 | 719 | rna-XM_027993269.1 2279647 | 1 | 5413774 | 5414492 | Aphis gossypii 80765 | ACG|GTATTTAAAT...TTGTTTTTAAGT/TTGTTTTTAAGT...TACAG|ATT | 2 | 1 | 10.013 |
12240141 | GT-AG | 0 | 1.000000099473604e-05 | 560 | rna-XM_027993269.1 2279647 | 2 | 5414694 | 5415253 | Aphis gossypii 80765 | GAG|GTGAGCAGAT...AATTTATTAATT/AATTTATTAATT...TTTAG|TGT | 2 | 1 | 22.997 |
12240142 | GT-AG | 0 | 4.272251901140746e-05 | 82 | rna-XM_027993269.1 2279647 | 3 | 5415411 | 5415492 | Aphis gossypii 80765 | CAA|GTAATATTTT...AAATACTTGACA/ATATATTTAATA...TATAG|GTA | 0 | 1 | 33.14 |
12240143 | GT-AG | 0 | 1.000000099473604e-05 | 124 | rna-XM_027993269.1 2279647 | 4 | 5415639 | 5415762 | Aphis gossypii 80765 | ATG|GTGATTCAAA...TTTATTTTATTT/ATTTTATTTATC...CATAG|GAT | 2 | 1 | 42.571 |
12240144 | GT-AG | 0 | 1.000000099473604e-05 | 1013 | rna-XM_027993269.1 2279647 | 5 | 5415869 | 5416881 | Aphis gossypii 80765 | AAG|GTAAGAAGTT...TATTCCTTTATA/TGTAATTTTATT...AACAG|GTT | 0 | 1 | 49.419 |
12240145 | GT-AG | 0 | 1.1715024124296128e-05 | 4126 | rna-XM_027993269.1 2279647 | 6 | 5417159 | 5421284 | Aphis gossypii 80765 | TCG|GTAAATATAT...TAATATTTAATA/TCAATTTTCACC...TTCAG|ATG | 1 | 1 | 67.313 |
12240146 | GT-AG | 0 | 0.0107408241758748 | 619 | rna-XM_027993269.1 2279647 | 7 | 5421339 | 5421957 | Aphis gossypii 80765 | TTA|GTACGTATTT...ATTCTCTTAATA/AATTTATTGATT...TTTAG|AAC | 1 | 1 | 70.801 |
12240147 | GT-AG | 0 | 0.0163043292150958 | 78 | rna-XM_027993269.1 2279647 | 8 | 5422043 | 5422120 | Aphis gossypii 80765 | TCA|GTATGTTGCT...TAAATTATAATT/TTATAATTAATG...ATTAG|GTC | 2 | 1 | 76.292 |
12240148 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-XM_027993269.1 2279647 | 9 | 5422219 | 5422285 | Aphis gossypii 80765 | TAG|GTTAGTAATA...ATTATTTTACAT/CTCATACTTATT...TATAG|TGG | 1 | 1 | 82.623 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);