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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 2279646

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240129 GT-AG 0 0.0001099630317726 3683 rna-XM_027997632.1 2279646 1 2446644 2450326 Aphis gossypii 80765 TAG|GTAATCTTAT...ATGTATTTAAAG/TATGTATTTAAA...TTCAG|TGG 1 1 1.028
12240130 GT-AG 0 1.000000099473604e-05 1012 rna-XM_027997632.1 2279646 2 2450509 2451520 Aphis gossypii 80765 AGA|GTAAGTACCA...TATTGCTTATTT/TTATTGCTTATT...TATAG|ACC 0 1 12.717
12240131 GT-AG 0 1.000000099473604e-05 155 rna-XM_027997632.1 2279646 3 2451703 2451857 Aphis gossypii 80765 ATT|GTAAGTAATG...AATATTTTATAC/TAATAGTTTATT...TTCAG|GAT 2 1 24.406
12240132 GT-AG 0 1.000000099473604e-05 1063 rna-XM_027997632.1 2279646 4 2452097 2453159 Aphis gossypii 80765 AAG|GTAATAAATC...CATGCTTTATAA/TTTACATTCATG...CATAG|TCA 1 1 39.756
12240133 GT-AG 0 1.000000099473604e-05 93 rna-XM_027997632.1 2279646 5 2453334 2453426 Aphis gossypii 80765 CAG|GTCAGTTCAA...TTTACTTTAATA/ATATATTTTACT...CTTAG|AAA 1 1 50.931
12240134 GT-AG 0 1.000000099473604e-05 70 rna-XM_027997632.1 2279646 6 2453521 2453590 Aphis gossypii 80765 CAG|GTAAAATTAA...AATTTCTAATTT/TAATTTCTAATT...TGCAG|TGG 2 1 56.969
12240135 GT-AG 0 1.301956240240564e-05 20840 rna-XM_027997632.1 2279646 7 2453741 2474580 Aphis gossypii 80765 CAG|GTAATTTTAT...TGCATGTTAATT/TGCATGTTAATT...TTTAG|ATT 2 1 66.602
12240136 GT-AG 0 1.000000099473604e-05 70 rna-XM_027997632.1 2279646 8 2474747 2474816 Aphis gossypii 80765 ATG|GTGATTATCA...TTGGCATTAGTC/TATTTATTCATT...TACAG|TGC 0 1 77.264
12240137 GT-AG 0 1.000000099473604e-05 291 rna-XM_027997632.1 2279646 9 2474897 2475187 Aphis gossypii 80765 CAG|GTAATTAATT...TTATTATTATTT/TTATTTTTCAAT...TTTAG|ACA 2 1 82.402
12240138 GT-AG 0 1.000000099473604e-05 224 rna-XM_027997632.1 2279646 10 2475284 2475507 Aphis gossypii 80765 AAG|GTAAATAGTT...AAATTTTTAATT/TTATTTTTCATA...TAAAG|GAT 2 1 88.568
12240139 GT-AG 0 0.0001110224447285 106 rna-XM_027997632.1 2279646 11 2475638 2475743 Aphis gossypii 80765 TTC|GTAAGTATAA...TCTTTCTTTACA/TCTTTCTTTACA...AAAAG|GTA 0 1 96.917

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.063ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)