introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 2279646
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240129 | GT-AG | 0 | 0.0001099630317726 | 3683 | rna-XM_027997632.1 2279646 | 1 | 2446644 | 2450326 | Aphis gossypii 80765 | TAG|GTAATCTTAT...ATGTATTTAAAG/TATGTATTTAAA...TTCAG|TGG | 1 | 1 | 1.028 |
12240130 | GT-AG | 0 | 1.000000099473604e-05 | 1012 | rna-XM_027997632.1 2279646 | 2 | 2450509 | 2451520 | Aphis gossypii 80765 | AGA|GTAAGTACCA...TATTGCTTATTT/TTATTGCTTATT...TATAG|ACC | 0 | 1 | 12.717 |
12240131 | GT-AG | 0 | 1.000000099473604e-05 | 155 | rna-XM_027997632.1 2279646 | 3 | 2451703 | 2451857 | Aphis gossypii 80765 | ATT|GTAAGTAATG...AATATTTTATAC/TAATAGTTTATT...TTCAG|GAT | 2 | 1 | 24.406 |
12240132 | GT-AG | 0 | 1.000000099473604e-05 | 1063 | rna-XM_027997632.1 2279646 | 4 | 2452097 | 2453159 | Aphis gossypii 80765 | AAG|GTAATAAATC...CATGCTTTATAA/TTTACATTCATG...CATAG|TCA | 1 | 1 | 39.756 |
12240133 | GT-AG | 0 | 1.000000099473604e-05 | 93 | rna-XM_027997632.1 2279646 | 5 | 2453334 | 2453426 | Aphis gossypii 80765 | CAG|GTCAGTTCAA...TTTACTTTAATA/ATATATTTTACT...CTTAG|AAA | 1 | 1 | 50.931 |
12240134 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-XM_027997632.1 2279646 | 6 | 2453521 | 2453590 | Aphis gossypii 80765 | CAG|GTAAAATTAA...AATTTCTAATTT/TAATTTCTAATT...TGCAG|TGG | 2 | 1 | 56.969 |
12240135 | GT-AG | 0 | 1.301956240240564e-05 | 20840 | rna-XM_027997632.1 2279646 | 7 | 2453741 | 2474580 | Aphis gossypii 80765 | CAG|GTAATTTTAT...TGCATGTTAATT/TGCATGTTAATT...TTTAG|ATT | 2 | 1 | 66.602 |
12240136 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-XM_027997632.1 2279646 | 8 | 2474747 | 2474816 | Aphis gossypii 80765 | ATG|GTGATTATCA...TTGGCATTAGTC/TATTTATTCATT...TACAG|TGC | 0 | 1 | 77.264 |
12240137 | GT-AG | 0 | 1.000000099473604e-05 | 291 | rna-XM_027997632.1 2279646 | 9 | 2474897 | 2475187 | Aphis gossypii 80765 | CAG|GTAATTAATT...TTATTATTATTT/TTATTTTTCAAT...TTTAG|ACA | 2 | 1 | 82.402 |
12240138 | GT-AG | 0 | 1.000000099473604e-05 | 224 | rna-XM_027997632.1 2279646 | 10 | 2475284 | 2475507 | Aphis gossypii 80765 | AAG|GTAAATAGTT...AAATTTTTAATT/TTATTTTTCATA...TAAAG|GAT | 2 | 1 | 88.568 |
12240139 | GT-AG | 0 | 0.0001110224447285 | 106 | rna-XM_027997632.1 2279646 | 11 | 2475638 | 2475743 | Aphis gossypii 80765 | TTC|GTAAGTATAA...TCTTTCTTTACA/TCTTTCTTTACA...AAAAG|GTA | 0 | 1 | 96.917 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);