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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 2279645

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Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240120 GT-AG 0 1.000000099473604e-05 66 rna-XM_027991868.1 2279645 2 634563 634628 Aphis gossypii 80765 CAT|GTAAGTGAAT...GTAGTTTTGAAT/GTAGTTTTGAAT...TTTAG|ACA 2 1 14.704
12240121 GT-AG 0 0.0017933096862183 67 rna-XM_027991868.1 2279645 3 634301 634367 Aphis gossypii 80765 AGC|GTAAGTTTTA...ATTCACTTAATT/TTTTTACTTATT...TTTAG|ATG 2 1 26.854
12240122 GT-AG 0 2.605015718956344e-05 65 rna-XM_027991868.1 2279645 4 634047 634111 Aphis gossypii 80765 AAG|GTAATTTATT...ATTACATTAACT/ATTAACTTCATT...TTTAG|CTT 2 1 38.629
12240123 GT-AG 0 1.000000099473604e-05 79 rna-XM_027991868.1 2279645 5 633817 633895 Aphis gossypii 80765 GAG|GTACAGAGTA...TTCATTTTAAAC/ATAACTTTCATT...TTTAG|GTT 0 1 48.037
12240124 GT-AG 0 1.000000099473604e-05 72 rna-XM_027991868.1 2279645 6 633620 633691 Aphis gossypii 80765 AAA|GTAATAACAT...ATTTTATTAACT/ATTTTATTAACT...ATCAG|ATT 2 1 55.826
12240125 GT-AG 0 1.000000099473604e-05 66 rna-XM_027991868.1 2279645 7 633445 633510 Aphis gossypii 80765 CAT|GTAAGATAAA...TATTTTTTAAAT/TATTTTTTAAAT...TCAAG|TTT 0 1 62.617
12240126 GT-AG 0 0.0012871111315648 62 rna-XM_027991868.1 2279645 8 633251 633312 Aphis gossypii 80765 ACG|GTATAGTAAT...AAATCTTTATTG/TTTTAATTAATT...TTTAG|ATG 0 1 70.841
12240127 GT-AG 0 2.2639035042644972e-05 60 rna-XM_027991868.1 2279645 9 633034 633093 Aphis gossypii 80765 CTA|GTAAATAATC...TGTTTCATATCA/ATTTGTTTCATA...TTTAG|AAT 1 1 80.623
12240128 GT-AG 0 2.8778737504055182e-05 662 rna-XM_027991868.1 2279645 10 632154 632815 Aphis gossypii 80765 GAG|GTAAATTTAA...TACTCCTCATTT/ATACTCCTCATT...TTTAG|AAA 0 1 94.206
12240605 GT-AG 0 0.0056165823474104 83 rna-XM_027991868.1 2279645 1 634837 634919 Aphis gossypii 80765 TAG|GTACCTAGAT...TTTTTCTTCATC/TTTTTCTTCATC...TTCAG|ACT   0 2.43

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 30.333ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)