introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2279645
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Suggested facets: score, length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240120 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-XM_027991868.1 2279645 | 2 | 634563 | 634628 | Aphis gossypii 80765 | CAT|GTAAGTGAAT...GTAGTTTTGAAT/GTAGTTTTGAAT...TTTAG|ACA | 2 | 1 | 14.704 |
12240121 | GT-AG | 0 | 0.0017933096862183 | 67 | rna-XM_027991868.1 2279645 | 3 | 634301 | 634367 | Aphis gossypii 80765 | AGC|GTAAGTTTTA...ATTCACTTAATT/TTTTTACTTATT...TTTAG|ATG | 2 | 1 | 26.854 |
12240122 | GT-AG | 0 | 2.605015718956344e-05 | 65 | rna-XM_027991868.1 2279645 | 4 | 634047 | 634111 | Aphis gossypii 80765 | AAG|GTAATTTATT...ATTACATTAACT/ATTAACTTCATT...TTTAG|CTT | 2 | 1 | 38.629 |
12240123 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_027991868.1 2279645 | 5 | 633817 | 633895 | Aphis gossypii 80765 | GAG|GTACAGAGTA...TTCATTTTAAAC/ATAACTTTCATT...TTTAG|GTT | 0 | 1 | 48.037 |
12240124 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-XM_027991868.1 2279645 | 6 | 633620 | 633691 | Aphis gossypii 80765 | AAA|GTAATAACAT...ATTTTATTAACT/ATTTTATTAACT...ATCAG|ATT | 2 | 1 | 55.826 |
12240125 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-XM_027991868.1 2279645 | 7 | 633445 | 633510 | Aphis gossypii 80765 | CAT|GTAAGATAAA...TATTTTTTAAAT/TATTTTTTAAAT...TCAAG|TTT | 0 | 1 | 62.617 |
12240126 | GT-AG | 0 | 0.0012871111315648 | 62 | rna-XM_027991868.1 2279645 | 8 | 633251 | 633312 | Aphis gossypii 80765 | ACG|GTATAGTAAT...AAATCTTTATTG/TTTTAATTAATT...TTTAG|ATG | 0 | 1 | 70.841 |
12240127 | GT-AG | 0 | 2.2639035042644972e-05 | 60 | rna-XM_027991868.1 2279645 | 9 | 633034 | 633093 | Aphis gossypii 80765 | CTA|GTAAATAATC...TGTTTCATATCA/ATTTGTTTCATA...TTTAG|AAT | 1 | 1 | 80.623 |
12240128 | GT-AG | 0 | 2.8778737504055182e-05 | 662 | rna-XM_027991868.1 2279645 | 10 | 632154 | 632815 | Aphis gossypii 80765 | GAG|GTAAATTTAA...TACTCCTCATTT/ATACTCCTCATT...TTTAG|AAA | 0 | 1 | 94.206 |
12240605 | GT-AG | 0 | 0.0056165823474104 | 83 | rna-XM_027991868.1 2279645 | 1 | 634837 | 634919 | Aphis gossypii 80765 | TAG|GTACCTAGAT...TTTTTCTTCATC/TTTTTCTTCATC...TTCAG|ACT | 0 | 2.43 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);