introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2279644
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240110 | GT-AG | 0 | 1.8701932558568032e-05 | 745 | rna-XM_027998635.1 2279644 | 1 | 4432963 | 4433707 | Aphis gossypii 80765 | ACG|GTAAGTAATT...TTTTTCTTGACA/TTTTTCTTGACA...TTCAG|GTC | 0 | 1 | 3.592 |
12240111 | GT-AG | 0 | 0.0291437032702015 | 25160 | rna-XM_027998635.1 2279644 | 2 | 4407722 | 4432881 | Aphis gossypii 80765 | TGC|GTATGTATGC...ATTGTTTTATTT/TTTTGTTTTATT...TTCAG|GGG | 0 | 1 | 8.696 |
12240112 | GT-AG | 0 | 0.0012667377403731 | 2552 | rna-XM_027998635.1 2279644 | 3 | 4405084 | 4407635 | Aphis gossypii 80765 | CAA|GTAAGTTTTA...TCATTTTTAACA/TTTTTACTAAAT...AATAG|GTA | 2 | 1 | 14.115 |
12240113 | GT-AG | 0 | 1.967121609535424e-05 | 61 | rna-XM_027998635.1 2279644 | 4 | 4404885 | 4404945 | Aphis gossypii 80765 | TAC|GTAATTAAAT...GAATCGTTAATT/GAATCGTTAATT...TTCAG|GGA | 2 | 1 | 22.81 |
12240114 | GT-AG | 0 | 1.000000099473604e-05 | 567 | rna-XM_027998635.1 2279644 | 5 | 4404167 | 4404733 | Aphis gossypii 80765 | CTG|GTAAGATTAT...CTTACTTTATAT/TCTAAACTTACT...TTTAG|GTA | 0 | 1 | 32.325 |
12240115 | GT-AG | 0 | 1.9419913451677557e-05 | 556 | rna-XM_027998635.1 2279644 | 6 | 4403489 | 4404044 | Aphis gossypii 80765 | CAG|GTATTAAATC...TTTTTCATGAAT/GTATTTTTCATG...TTCAG|AGG | 2 | 1 | 40.013 |
12240116 | GT-AG | 0 | 1.000000099473604e-05 | 939 | rna-XM_027998635.1 2279644 | 7 | 4402465 | 4403403 | Aphis gossypii 80765 | CAG|GTAAAACTTA...CAGTCTTTAATG/GTAATTTTCACT...TTCAG|GTT | 0 | 1 | 45.369 |
12240117 | GT-AG | 0 | 1.000000099473604e-05 | 254 | rna-XM_027998635.1 2279644 | 8 | 4401938 | 4402191 | Aphis gossypii 80765 | GTT|GTGAGTATAT...TAGATATTAATA/ATGTATCTGATA...TCTAG|GTA | 0 | 1 | 62.571 |
12240118 | GT-AG | 0 | 4.379641666762822e-05 | 96 | rna-XM_027998635.1 2279644 | 9 | 4401663 | 4401758 | Aphis gossypii 80765 | ATT|GTAAGTTACT...TAATATTTGAAT/AAAATTTTTAAT...TGCAG|ATT | 2 | 1 | 73.85 |
12240119 | GT-AG | 0 | 1.000000099473604e-05 | 552 | rna-XM_027998635.1 2279644 | 10 | 4400944 | 4401495 | Aphis gossypii 80765 | CAG|GTAAGTCGTT...ATATGTTTATTT/GATATGTTTATT...TCTAG|TTC | 1 | 1 | 84.373 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);