introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 2279642
This data as json, CSV (advanced)
Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240096 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-XM_027981028.1 2279642 | 1 | 4667886 | 4667943 | Aphis gossypii 80765 | TAA|GTGAGTAATA...TACCTTTTAATG/TAATTATTAACT...TCCAG|TTC | 2 | 1 | 6.485 |
12240097 | GT-AG | 0 | 2.574793887141301e-05 | 78 | rna-XM_027981028.1 2279642 | 2 | 4668247 | 4668324 | Aphis gossypii 80765 | CAG|GTAAGTTGCT...TTTTTTTTAATT/TTTTTTTTAATT...TTTAG|AAA | 2 | 1 | 24.848 |
12240098 | GC-AG | 0 | 1.000000099473604e-05 | 85 | rna-XM_027981028.1 2279642 | 3 | 4668527 | 4668611 | Aphis gossypii 80765 | ATG|GCAAGTAAAT...GCTGTTTTAATA/TATTATTTTATT...CTTAG|TGT | 0 | 1 | 37.091 |
12240099 | GT-AG | 0 | 0.0160012671665569 | 64 | rna-XM_027981028.1 2279642 | 4 | 4668771 | 4668834 | Aphis gossypii 80765 | AAA|GTATGATTAT...TTTCCCTTATTT/TTTTCCCTTATT...TAAAG|TGT | 0 | 1 | 46.727 |
12240100 | GT-AG | 0 | 0.0001813824156425 | 71 | rna-XM_027981028.1 2279642 | 5 | 4669004 | 4669074 | Aphis gossypii 80765 | TTG|GTATTACATT...AAAATCTTATTC/GTTAATTTCATT...CATAG|TGG | 1 | 1 | 56.97 |
12240101 | GT-AG | 0 | 0.0029129443873743 | 191 | rna-XM_027981028.1 2279642 | 6 | 4669188 | 4669378 | Aphis gossypii 80765 | TTG|GTATGTATTT...GAATACTTACCT/AGAATACTTACC...TACAG|AAA | 0 | 1 | 63.818 |
12240102 | GT-AG | 0 | 0.0028537903836926 | 183 | rna-XM_027981028.1 2279642 | 7 | 4669543 | 4669725 | Aphis gossypii 80765 | TGA|GTATGTCGCC...TTTGCATTATCA/TTGTTTGTTATT...TTAAG|GGC | 2 | 1 | 73.758 |
12240103 | GT-AG | 0 | 1.4540394693094568e-05 | 60 | rna-XM_027981028.1 2279642 | 8 | 4669910 | 4669969 | Aphis gossypii 80765 | AAG|GTAATCCATA...ATTTGTTTAACA/ATTTGTTTAACA...ATCAG|GAC | 0 | 1 | 84.909 |
12240104 | GT-AG | 0 | 1.000000099473604e-05 | 214 | rna-XM_027981028.1 2279642 | 9 | 4670086 | 4670299 | Aphis gossypii 80765 | CAG|GTAAAAGTTG...TGTGTTTTAATT/TGTGTTTTAATT...TGTAG|GCC | 2 | 1 | 91.939 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);