introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 2279640
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240081 | GT-AG | 0 | 1.000000099473604e-05 | 137 | rna-XM_027989759.1 2279640 | 1 | 5170491 | 5170627 | Aphis gossypii 80765 | CAG|GTAATGTTAA...TGATTTTTGATA/TGATTTTTGATA...TGTAG|GGC | 0 | 1 | 2.857 |
12240082 | GT-AG | 0 | 7.983246053622583e-05 | 74 | rna-XM_027989759.1 2279640 | 2 | 5170835 | 5170908 | Aphis gossypii 80765 | AAT|GTACATACAT...AAGTGTTTAATT/AAGTGTTTAATT...TTTAG|GAT | 0 | 1 | 15.179 |
12240083 | GT-AG | 0 | 0.0050168392327991 | 303 | rna-XM_027989759.1 2279640 | 3 | 5171146 | 5171448 | Aphis gossypii 80765 | AAG|GTATGTTTAT...CTGATTTTAATG/AAATGTTTCATT...TTTAG|ATT | 0 | 1 | 29.286 |
12240084 | GT-AG | 0 | 0.0015433093063769 | 68 | rna-XM_027989759.1 2279640 | 4 | 5171654 | 5171721 | Aphis gossypii 80765 | ATG|GTATAGTTTA...TGTGATTTAAAT/AAGATTGTGATT...TTAAG|AAC | 1 | 1 | 41.488 |
12240085 | GT-AG | 0 | 0.0137954168765769 | 460 | rna-XM_027989759.1 2279640 | 5 | 5171962 | 5172421 | Aphis gossypii 80765 | AAA|GTATGTATAT...ATTTTCTTAAAT/CTATTTTTAATT...AATAG|GTA | 1 | 1 | 55.774 |
12240086 | GT-AG | 0 | 4.654900555771021e-05 | 553 | rna-XM_027989759.1 2279640 | 6 | 5172575 | 5173127 | Aphis gossypii 80765 | GAA|GTAAGTTATA...TTTGTATTAATT/TTTGTATTAATT...TCTAG|TAA | 1 | 1 | 64.881 |
12240087 | GT-AG | 0 | 0.0092758617730088 | 845 | rna-XM_027989759.1 2279640 | 7 | 5173255 | 5174099 | Aphis gossypii 80765 | TAA|GTATGTATTT...TATTTCTTATGT/ATATTTCTTATG...AATAG|GTG | 2 | 1 | 72.44 |
12240088 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027989759.1 2279640 | 8 | 5174354 | 5174408 | Aphis gossypii 80765 | TAG|GTAATAGAAA...TTTATCTTAATT/TTTATCTTAATT...TTTAG|GCG | 1 | 1 | 87.56 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);