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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2279640

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240081 GT-AG 0 1.000000099473604e-05 137 rna-XM_027989759.1 2279640 1 5170491 5170627 Aphis gossypii 80765 CAG|GTAATGTTAA...TGATTTTTGATA/TGATTTTTGATA...TGTAG|GGC 0 1 2.857
12240082 GT-AG 0 7.983246053622583e-05 74 rna-XM_027989759.1 2279640 2 5170835 5170908 Aphis gossypii 80765 AAT|GTACATACAT...AAGTGTTTAATT/AAGTGTTTAATT...TTTAG|GAT 0 1 15.179
12240083 GT-AG 0 0.0050168392327991 303 rna-XM_027989759.1 2279640 3 5171146 5171448 Aphis gossypii 80765 AAG|GTATGTTTAT...CTGATTTTAATG/AAATGTTTCATT...TTTAG|ATT 0 1 29.286
12240084 GT-AG 0 0.0015433093063769 68 rna-XM_027989759.1 2279640 4 5171654 5171721 Aphis gossypii 80765 ATG|GTATAGTTTA...TGTGATTTAAAT/AAGATTGTGATT...TTAAG|AAC 1 1 41.488
12240085 GT-AG 0 0.0137954168765769 460 rna-XM_027989759.1 2279640 5 5171962 5172421 Aphis gossypii 80765 AAA|GTATGTATAT...ATTTTCTTAAAT/CTATTTTTAATT...AATAG|GTA 1 1 55.774
12240086 GT-AG 0 4.654900555771021e-05 553 rna-XM_027989759.1 2279640 6 5172575 5173127 Aphis gossypii 80765 GAA|GTAAGTTATA...TTTGTATTAATT/TTTGTATTAATT...TCTAG|TAA 1 1 64.881
12240087 GT-AG 0 0.0092758617730088 845 rna-XM_027989759.1 2279640 7 5173255 5174099 Aphis gossypii 80765 TAA|GTATGTATTT...TATTTCTTATGT/ATATTTCTTATG...AATAG|GTG 2 1 72.44
12240088 GT-AG 0 1.000000099473604e-05 55 rna-XM_027989759.1 2279640 8 5174354 5174408 Aphis gossypii 80765 TAG|GTAATAGAAA...TTTATCTTAATT/TTTATCTTAATT...TTTAG|GCG 1 1 87.56

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.172ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)