home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 2279639

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240071 GT-AG 0 1.000000099473604e-05 79 rna-XM_027997699.1 2279639 1 2177711 2177789 Aphis gossypii 80765 CAA|GTTAGTATTT...ATACCTTTAAAA/AATAAATTGATT...TATAG|GGT 0 1 3.671
12240072 GT-AG 0 0.0001617696228315 70 rna-XM_027997699.1 2279639 2 2177414 2177483 Aphis gossypii 80765 TTG|GTCTGTTGTT...ATTGTTTTATAA/GATTGTTTTATA...TTTAG|GCC 2 1 16.9
12240073 GT-AG 0 1.000000099473604e-05 60 rna-XM_027997699.1 2279639 3 2177172 2177231 Aphis gossypii 80765 CAG|GTAATAACGT...TAATCCTTTACT/CCATAATTGATT...CATAG|GTG 1 1 27.506
12240074 GT-AG 0 1.000000099473604e-05 64 rna-XM_027997699.1 2279639 4 2176931 2176994 Aphis gossypii 80765 AAG|GTAAGAAAAA...ATATTTTTAAAT/ACATTACTTACT...TTTAG|GTG 1 1 37.821
12240075 GT-AG 0 1.000000099473604e-05 254 rna-XM_027997699.1 2279639 5 2176252 2176505 Aphis gossypii 80765 GAG|GTAAGAAATT...AAATACTTAATT/ATTATTTTTATT...TTCAG|TCA 0 1 62.587
12240076 GT-AG 0 1.000000099473604e-05 1456 rna-XM_027997699.1 2279639 6 2174720 2176175 Aphis gossypii 80765 AAG|GTTGGTTTCA...ATAACTATAATA/ATAATATTGATA...TACAG|ATT 1 1 67.016
12240077 GT-AG 0 1.000000099473604e-05 68 rna-XM_027997699.1 2279639 7 2174562 2174629 Aphis gossypii 80765 CTG|GTAAGTTTAA...ATACTATTAATG/TATTTATTTATT...TTTAG|GAA 1 1 72.261
12240078 GT-AG 0 1.000000099473604e-05 456 rna-XM_027997699.1 2279639 8 2173958 2174413 Aphis gossypii 80765 CAG|GTTAGTCATA...AAGCTTTTGATA/TTTATATTTATA...TTTAG|ATA 2 1 80.886
12240079 GT-AG 0 0.0161831690206392 74 rna-XM_027997699.1 2279639 9 2173776 2173849 Aphis gossypii 80765 TGT|GTATGTATAG...TCTATTTTATTA/TTCTATTTTATT...TTTAG|TAT 2 1 87.179
12240080 GT-AG 0 1.000000099473604e-05 720 rna-XM_027997699.1 2279639 10 2172932 2173651 Aphis gossypii 80765 ATG|GTAAATATTT...ATATTTTTGAGT/CATATATTTATA...GACAG|GAT 0 1 94.406

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 50.246ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)