introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2279639
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240071 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_027997699.1 2279639 | 1 | 2177711 | 2177789 | Aphis gossypii 80765 | CAA|GTTAGTATTT...ATACCTTTAAAA/AATAAATTGATT...TATAG|GGT | 0 | 1 | 3.671 |
12240072 | GT-AG | 0 | 0.0001617696228315 | 70 | rna-XM_027997699.1 2279639 | 2 | 2177414 | 2177483 | Aphis gossypii 80765 | TTG|GTCTGTTGTT...ATTGTTTTATAA/GATTGTTTTATA...TTTAG|GCC | 2 | 1 | 16.9 |
12240073 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027997699.1 2279639 | 3 | 2177172 | 2177231 | Aphis gossypii 80765 | CAG|GTAATAACGT...TAATCCTTTACT/CCATAATTGATT...CATAG|GTG | 1 | 1 | 27.506 |
12240074 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-XM_027997699.1 2279639 | 4 | 2176931 | 2176994 | Aphis gossypii 80765 | AAG|GTAAGAAAAA...ATATTTTTAAAT/ACATTACTTACT...TTTAG|GTG | 1 | 1 | 37.821 |
12240075 | GT-AG | 0 | 1.000000099473604e-05 | 254 | rna-XM_027997699.1 2279639 | 5 | 2176252 | 2176505 | Aphis gossypii 80765 | GAG|GTAAGAAATT...AAATACTTAATT/ATTATTTTTATT...TTCAG|TCA | 0 | 1 | 62.587 |
12240076 | GT-AG | 0 | 1.000000099473604e-05 | 1456 | rna-XM_027997699.1 2279639 | 6 | 2174720 | 2176175 | Aphis gossypii 80765 | AAG|GTTGGTTTCA...ATAACTATAATA/ATAATATTGATA...TACAG|ATT | 1 | 1 | 67.016 |
12240077 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-XM_027997699.1 2279639 | 7 | 2174562 | 2174629 | Aphis gossypii 80765 | CTG|GTAAGTTTAA...ATACTATTAATG/TATTTATTTATT...TTTAG|GAA | 1 | 1 | 72.261 |
12240078 | GT-AG | 0 | 1.000000099473604e-05 | 456 | rna-XM_027997699.1 2279639 | 8 | 2173958 | 2174413 | Aphis gossypii 80765 | CAG|GTTAGTCATA...AAGCTTTTGATA/TTTATATTTATA...TTTAG|ATA | 2 | 1 | 80.886 |
12240079 | GT-AG | 0 | 0.0161831690206392 | 74 | rna-XM_027997699.1 2279639 | 9 | 2173776 | 2173849 | Aphis gossypii 80765 | TGT|GTATGTATAG...TCTATTTTATTA/TTCTATTTTATT...TTTAG|TAT | 2 | 1 | 87.179 |
12240080 | GT-AG | 0 | 1.000000099473604e-05 | 720 | rna-XM_027997699.1 2279639 | 10 | 2172932 | 2173651 | Aphis gossypii 80765 | ATG|GTAAATATTT...ATATTTTTGAGT/CATATATTTATA...GACAG|GAT | 0 | 1 | 94.406 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);