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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 2279638

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240060 GT-AG 0 1.000000099473604e-05 507 rna-XM_027998152.1 2279638 1 5364820 5365326 Aphis gossypii 80765 AAA|GTAAGGATGT...AATATTTTAAAT/AATATTTTAAAT...TCCAG|ACT 0 1 6.944
12240061 GT-AG 0 1.000000099473604e-05 136 rna-XM_027998152.1 2279638 2 5365509 5365644 Aphis gossypii 80765 TAA|GTAAAAATTT...ATTTGTTTAGTT/CATTTGTTTAGT...TTCAG|ATT 2 1 17.477
12240062 GT-AG 0 3.121613243120121e-05 61 rna-XM_027998152.1 2279638 3 5365826 5365886 Aphis gossypii 80765 AAA|GTAAATTAAC...TTTTGTTTGATA/TTTTGTTTGATA...TTTAG|AAT 0 1 27.951
12240063 GT-AG 0 0.0001288240661024 109 rna-XM_027998152.1 2279638 4 5366073 5366181 Aphis gossypii 80765 AAA|GTAATTTCAT...TATTTGTTGATT/TATTTGTTGATT...CTTAG|TTA 0 1 38.715
12240064 GT-AG 0 3.096570859369221e-05 1054 rna-XM_027998152.1 2279638 5 5366340 5367393 Aphis gossypii 80765 TAG|GTAAATTTGT...CCATTATTAATT/CCATTATTAATT...TTTAG|TGA 2 1 47.859
12240065 GT-AG 0 1.000000099473604e-05 58 rna-XM_027998152.1 2279638 6 5367554 5367611 Aphis gossypii 80765 AAT|GTTAGTATTT...CTAATTTTGAAT/CTTAAACTAATT...TTCAG|GAA 0 1 57.118
12240066 GT-AG 0 0.0007787233363818 1126 rna-XM_027998152.1 2279638 7 5367681 5368806 Aphis gossypii 80765 CAA|GTATGTAATA...TTATTCATAATT/ATATTATTCATA...TTTAG|GAG 0 1 61.111
12240067 GT-AG 0 1.000000099473604e-05 72 rna-XM_027998152.1 2279638 8 5368951 5369022 Aphis gossypii 80765 AAG|GTTTTTAAAT...GATATTTTATTC/TTTATTCTCATT...TTTAG|CTT 0 1 69.444
12240068 GT-AG 0 0.0003444694500809 82 rna-XM_027998152.1 2279638 9 5369231 5369312 Aphis gossypii 80765 AGG|GTAATTTTTT...ATGATTTTAAAT/ATGATTTTAAAT...GTTAG|TGA 1 1 81.481
12240069 GT-AG 0 1.000000099473604e-05 68 rna-XM_027998152.1 2279638 10 5369471 5369538 Aphis gossypii 80765 ACT|GTAAGGCTTT...TGTTCATTATTT/TATATGTTCATT...TCTAG|GAC 0 1 90.625
12240070 GT-AG 0 1.000000099473604e-05 76 rna-XM_027998152.1 2279638 11 5369610 5369685 Aphis gossypii 80765 CAG|GTAATTATTC...TTGTTATTAATA/TAATTATTGATT...TTTAG|TGA 2 1 94.734

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 40.265ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)