introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 2279638
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240060 | GT-AG | 0 | 1.000000099473604e-05 | 507 | rna-XM_027998152.1 2279638 | 1 | 5364820 | 5365326 | Aphis gossypii 80765 | AAA|GTAAGGATGT...AATATTTTAAAT/AATATTTTAAAT...TCCAG|ACT | 0 | 1 | 6.944 |
12240061 | GT-AG | 0 | 1.000000099473604e-05 | 136 | rna-XM_027998152.1 2279638 | 2 | 5365509 | 5365644 | Aphis gossypii 80765 | TAA|GTAAAAATTT...ATTTGTTTAGTT/CATTTGTTTAGT...TTCAG|ATT | 2 | 1 | 17.477 |
12240062 | GT-AG | 0 | 3.121613243120121e-05 | 61 | rna-XM_027998152.1 2279638 | 3 | 5365826 | 5365886 | Aphis gossypii 80765 | AAA|GTAAATTAAC...TTTTGTTTGATA/TTTTGTTTGATA...TTTAG|AAT | 0 | 1 | 27.951 |
12240063 | GT-AG | 0 | 0.0001288240661024 | 109 | rna-XM_027998152.1 2279638 | 4 | 5366073 | 5366181 | Aphis gossypii 80765 | AAA|GTAATTTCAT...TATTTGTTGATT/TATTTGTTGATT...CTTAG|TTA | 0 | 1 | 38.715 |
12240064 | GT-AG | 0 | 3.096570859369221e-05 | 1054 | rna-XM_027998152.1 2279638 | 5 | 5366340 | 5367393 | Aphis gossypii 80765 | TAG|GTAAATTTGT...CCATTATTAATT/CCATTATTAATT...TTTAG|TGA | 2 | 1 | 47.859 |
12240065 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-XM_027998152.1 2279638 | 6 | 5367554 | 5367611 | Aphis gossypii 80765 | AAT|GTTAGTATTT...CTAATTTTGAAT/CTTAAACTAATT...TTCAG|GAA | 0 | 1 | 57.118 |
12240066 | GT-AG | 0 | 0.0007787233363818 | 1126 | rna-XM_027998152.1 2279638 | 7 | 5367681 | 5368806 | Aphis gossypii 80765 | CAA|GTATGTAATA...TTATTCATAATT/ATATTATTCATA...TTTAG|GAG | 0 | 1 | 61.111 |
12240067 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-XM_027998152.1 2279638 | 8 | 5368951 | 5369022 | Aphis gossypii 80765 | AAG|GTTTTTAAAT...GATATTTTATTC/TTTATTCTCATT...TTTAG|CTT | 0 | 1 | 69.444 |
12240068 | GT-AG | 0 | 0.0003444694500809 | 82 | rna-XM_027998152.1 2279638 | 9 | 5369231 | 5369312 | Aphis gossypii 80765 | AGG|GTAATTTTTT...ATGATTTTAAAT/ATGATTTTAAAT...GTTAG|TGA | 1 | 1 | 81.481 |
12240069 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-XM_027998152.1 2279638 | 10 | 5369471 | 5369538 | Aphis gossypii 80765 | ACT|GTAAGGCTTT...TGTTCATTATTT/TATATGTTCATT...TCTAG|GAC | 0 | 1 | 90.625 |
12240070 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-XM_027998152.1 2279638 | 11 | 5369610 | 5369685 | Aphis gossypii 80765 | CAG|GTAATTATTC...TTGTTATTAATA/TAATTATTGATT...TTTAG|TGA | 2 | 1 | 94.734 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);