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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 2279636

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240044 GT-AG 0 1.000000099473604e-05 29047 rna-XM_027989990.1 2279636 2 1762051 1791097 Aphis gossypii 80765 CAG|GTAAGTGCTT...TGTTTCTTTTTT/GTTATATTAATG...TTCAG|ACA 2 1 21.659
12240045 GT-AG 0 0.0001588854848366 194 rna-XM_027989990.1 2279636 3 1761774 1761967 Aphis gossypii 80765 ATC|GTAAGTATAA...GTTTCTTTAAAT/ATATTTTTTATA...TACAG|AAG 1 1 25.663
12240046 GT-AG 0 0.0002995031634373 74 rna-XM_027989990.1 2279636 4 1761592 1761665 Aphis gossypii 80765 AAT|GTACGTATCA...ATAATTTTGTTC/TGTATATTCAAT...CCTAG|ACA 1 1 30.873
12240047 GT-AG 0 2.926693855613419e-05 278 rna-XM_027989990.1 2279636 5 1761239 1761516 Aphis gossypii 80765 ACG|GTAGGTATTT...TTAACCTAAATT/CTGCATTTAACC...TTTAG|AGT 1 1 34.491
12240048 GT-AG 0 1.000000099473604e-05 1168 rna-XM_027989990.1 2279636 6 1759982 1761149 Aphis gossypii 80765 CAG|GTCAGTTTTT...ATTTTATTAATT/ATTTTATTAATT...GTTAG|GCT 0 1 38.784
12240049 GT-AG 0 1.7447342594985625e-05 252 rna-XM_027989990.1 2279636 7 1759640 1759891 Aphis gossypii 80765 AAG|GTACGATATC...TTTTTTTTATTG/TTTTTTTTTATT...TACAG|ATT 0 1 43.126
12240050 GT-AG 0 0.0010543857202376 99 rna-XM_027989990.1 2279636 8 1759462 1759560 Aphis gossypii 80765 CGG|GTATGTATTA...AATATATTAATA/AATATATTAATA...TGCAG|GTT 1 1 46.937
12240051 GT-AG 0 1.519831025538072e-05 137 rna-XM_027989990.1 2279636 9 1759254 1759390 Aphis gossypii 80765 ACT|GTAAGTGTCG...ATTATATTATTC/TATTATATTATT...TTTAG|GTA 0 1 50.362
12240052 GT-AG 0 1.000000099473604e-05 889 rna-XM_027989990.1 2279636 10 1758160 1759048 Aphis gossypii 80765 AGG|GTAGGTATAA...CACCTATTAATT/CACCTATTAATT...TTCAG|ACG 1 1 60.251
12240053 GT-AG 0 0.2933387794306757 132 rna-XM_027989990.1 2279636 11 1757770 1757901 Aphis gossypii 80765 TCT|GTAACTTGAT...TTGATCTTATTT/TTTGATCTTATT...AATAG|CTG 1 1 72.697
12240054 GT-AG 0 2.140797321415586e-05 111 rna-XM_027989990.1 2279636 12 1757485 1757595 Aphis gossypii 80765 CCG|GTAGGCCGCT...TAGACATTAATT/TTTGTTGTAATT...CCTAG|GTC 1 1 81.09
12240055 GT-AG 0 1.000000099473604e-05 119 rna-XM_027989990.1 2279636 13 1757290 1757408 Aphis gossypii 80765 AAG|GTAATGCAAA...CCTATTTTAATC/CCTATTTTAATC...CACAG|GTC 2 1 84.756
12240056 GT-AG 0 0.0002023058891067 364 rna-XM_027989990.1 2279636 14 1756825 1757188 Aphis gossypii 80765 CAG|GTATGGTACA...TTACTCTTATTT/CTTATTTTAATT...GACAG|GTA 1 1 89.629
12240057 GT-AG 0 1.000000099473604e-05 131 rna-XM_027989990.1 2279636 15 1756558 1756688 Aphis gossypii 80765 ATT|GTGAGTATTT...TATACCTAAACG/GTCTGTTTTATA...TGCAG|AAA 2 1 96.189
12240604 GT-AG 0 3.740417922248618e-05 66 rna-XM_027989990.1 2279636 1 1791323 1791388 Aphis gossypii 80765 GCC|GTCCGTAACT...TATCTCTTATAT/CTATCTCTTATA...TATAG|GTA   0 15.774

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.736ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)