introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 2279633
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240027 | GT-AG | 0 | 1.0366327882671355e-05 | 59 | rna-XM_027997307.1 2279633 | 1 | 2630405 | 2630463 | Aphis gossypii 80765 | AAG|GTTTGTACAA...ATTATTTTAATG/ATTATTTTAATG...TACAG|TTT | 0 | 1 | 1.18 |
12240028 | GT-AG | 0 | 0.0842115520657645 | 58 | rna-XM_027997307.1 2279633 | 2 | 2630698 | 2630755 | Aphis gossypii 80765 | CAA|GTAACTTTGG...ATATTTTTACCT/CCTTTTTTTATA...TGTAG|GTA | 0 | 1 | 14.334 |
12240029 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-XM_027997307.1 2279633 | 3 | 2631128 | 2631199 | Aphis gossypii 80765 | GAA|GTAAGATTTT...ATTTACGTAATT/TTATAATTTACG...TTTAG|CCA | 0 | 1 | 35.245 |
12240030 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-XM_027997307.1 2279633 | 4 | 2631339 | 2631394 | Aphis gossypii 80765 | ATG|GTGATTATTT...TGTATGTTAAAT/TGTATGTTAAAT...TTTAG|CTG | 1 | 1 | 43.058 |
12240031 | GT-AG | 0 | 0.0021445796434011 | 65 | rna-XM_027997307.1 2279633 | 5 | 2631535 | 2631599 | Aphis gossypii 80765 | ATG|GTATAATATG...TAACCTTTAATT/CTATTGTTGAAT...TATAG|GAT | 0 | 1 | 50.927 |
12240032 | GT-AG | 0 | 0.0001912876948378 | 307 | rna-XM_027997307.1 2279633 | 6 | 2631863 | 2632169 | Aphis gossypii 80765 | AAG|GTAATTTGAA...ATTTCCTTGATT/ATAATTCTAACA...TACAG|ATA | 2 | 1 | 65.711 |
12240033 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027997307.1 2279633 | 7 | 2632358 | 2632416 | Aphis gossypii 80765 | AAG|GTAATATATT...TAATTTTTAATT/TAATTTTTAATT...TATAG|ATC | 1 | 1 | 76.279 |
12240034 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-XM_027997307.1 2279633 | 8 | 2632569 | 2632634 | Aphis gossypii 80765 | AAA|GTAAATGATT...ATTTTATTAATT/TAATTTTTCACT...TTTAG|CGT | 0 | 1 | 84.823 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);