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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2279633

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240027 GT-AG 0 1.0366327882671355e-05 59 rna-XM_027997307.1 2279633 1 2630405 2630463 Aphis gossypii 80765 AAG|GTTTGTACAA...ATTATTTTAATG/ATTATTTTAATG...TACAG|TTT 0 1 1.18
12240028 GT-AG 0 0.0842115520657645 58 rna-XM_027997307.1 2279633 2 2630698 2630755 Aphis gossypii 80765 CAA|GTAACTTTGG...ATATTTTTACCT/CCTTTTTTTATA...TGTAG|GTA 0 1 14.334
12240029 GT-AG 0 1.000000099473604e-05 72 rna-XM_027997307.1 2279633 3 2631128 2631199 Aphis gossypii 80765 GAA|GTAAGATTTT...ATTTACGTAATT/TTATAATTTACG...TTTAG|CCA 0 1 35.245
12240030 GT-AG 0 1.000000099473604e-05 56 rna-XM_027997307.1 2279633 4 2631339 2631394 Aphis gossypii 80765 ATG|GTGATTATTT...TGTATGTTAAAT/TGTATGTTAAAT...TTTAG|CTG 1 1 43.058
12240031 GT-AG 0 0.0021445796434011 65 rna-XM_027997307.1 2279633 5 2631535 2631599 Aphis gossypii 80765 ATG|GTATAATATG...TAACCTTTAATT/CTATTGTTGAAT...TATAG|GAT 0 1 50.927
12240032 GT-AG 0 0.0001912876948378 307 rna-XM_027997307.1 2279633 6 2631863 2632169 Aphis gossypii 80765 AAG|GTAATTTGAA...ATTTCCTTGATT/ATAATTCTAACA...TACAG|ATA 2 1 65.711
12240033 GT-AG 0 1.000000099473604e-05 59 rna-XM_027997307.1 2279633 7 2632358 2632416 Aphis gossypii 80765 AAG|GTAATATATT...TAATTTTTAATT/TAATTTTTAATT...TATAG|ATC 1 1 76.279
12240034 GT-AG 0 1.000000099473604e-05 66 rna-XM_027997307.1 2279633 8 2632569 2632634 Aphis gossypii 80765 AAA|GTAAATGATT...ATTTTATTAATT/TAATTTTTCACT...TTTAG|CGT 0 1 84.823

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.925ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)