introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 2279632
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240018 | GT-AG | 0 | 0.000223405298408 | 1531 | rna-XM_027995134.1 2279632 | 1 | 5532102 | 5533632 | Aphis gossypii 80765 | GGC|GTAAGTTTAT...AACTGTTTGATC/AACTGTTTGATC...AACAG|CAG | 0 | 1 | 38.552 |
12240019 | GT-AG | 0 | 1.000000099473604e-05 | 508 | rna-XM_027995134.1 2279632 | 2 | 5531512 | 5532019 | Aphis gossypii 80765 | GAT|GTTCGTGAAC...TATACTTTGACA/TTTATTCTAATC...TTCAG|ATC | 1 | 1 | 43.154 |
12240020 | GT-AG | 0 | 1.000000099473604e-05 | 450 | rna-XM_027995134.1 2279632 | 3 | 5530995 | 5531444 | Aphis gossypii 80765 | AAA|GTAAGTAATA...TTAATGTTAACA/TTAATGTTAACA...TATAG|CCG | 2 | 1 | 46.914 |
12240021 | GT-AG | 0 | 0.0053278922491125 | 67 | rna-XM_027995134.1 2279632 | 4 | 5530811 | 5530877 | Aphis gossypii 80765 | AAA|GTATGATTTA...ATTGTTTTATAT/TATTGTTTTATA...TTTAG|TCT | 2 | 1 | 53.479 |
12240022 | GT-AG | 0 | 4.934205468566146e-05 | 66 | rna-XM_027995134.1 2279632 | 5 | 5530654 | 5530719 | Aphis gossypii 80765 | TTG|GTAAGTTTGT...TAGTCATTGATG/GATGAACTAATT...TACAG|AAA | 0 | 1 | 58.586 |
12240023 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-XM_027995134.1 2279632 | 6 | 5530412 | 5530482 | Aphis gossypii 80765 | AAG|GTAATGTGCA...CTTTTCTTATTA/CCTTTTCTTATT...CACAG|AAG | 0 | 1 | 68.182 |
12240024 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-XM_027995134.1 2279632 | 7 | 5530225 | 5530281 | Aphis gossypii 80765 | TAG|GTAAAGTATT...CTCTCCTTCACT/TATATTTTCATG...TTTAG|AAC | 1 | 1 | 75.477 |
12240025 | GT-AG | 0 | 0.0020955514667909 | 58 | rna-XM_027995134.1 2279632 | 8 | 5530022 | 5530079 | Aphis gossypii 80765 | CAA|GTAACATTTA...TTAATTATAATT/TTATGATTTATA...AATAG|GAT | 2 | 1 | 83.614 |
12240026 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-XM_027995134.1 2279632 | 9 | 5529853 | 5529915 | Aphis gossypii 80765 | AAG|GTTAGTATAA...TATATTTTAATA/TATATTTTAATA...TTTAG|AGA | 0 | 1 | 89.562 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);