introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2279631
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240009 | GT-AG | 0 | 0.0002766508869444 | 73 | rna-XM_027998392.1 2279631 | 2 | 1585948 | 1586020 | Aphis gossypii 80765 | CAA|GTATATAGAG...CTAATTTTTGTT/TTTTGGCTGATG...TTTAG|AGA | 2 | 1 | 11.475 |
12240010 | GT-AG | 0 | 1.000000099473604e-05 | 74 | rna-XM_027998392.1 2279631 | 3 | 1585645 | 1585718 | Aphis gossypii 80765 | AAG|GTATGAAATA...TATGCATTATTG/TTAATTTTTATG...TATAG|GTC | 0 | 1 | 23.753 |
12240011 | GT-AG | 0 | 0.0093840980030261 | 71 | rna-XM_027998392.1 2279631 | 4 | 1585398 | 1585468 | Aphis gossypii 80765 | TTT|GTATGTATAT...TTTACTTCAATA/TTTTTATTTACT...TTCAG|AGA | 2 | 1 | 33.19 |
12240012 | GT-AG | 0 | 1.000000099473604e-05 | 1014 | rna-XM_027998392.1 2279631 | 5 | 1584287 | 1585300 | Aphis gossypii 80765 | AAA|GTAAGTAAAC...AATTCCTTATAT/ATTATATTGATT...TATAG|GTA | 0 | 1 | 38.391 |
12240013 | GT-AG | 0 | 0.3264179690378413 | 70 | rna-XM_027998392.1 2279631 | 6 | 1584060 | 1584129 | Aphis gossypii 80765 | AAT|GTATGTTTTT...TTTATTTTAGTT/GTGGTATTTATT...TTTAG|GTA | 1 | 1 | 46.81 |
12240014 | GT-AG | 0 | 0.0170254449110879 | 69 | rna-XM_027998392.1 2279631 | 7 | 1583878 | 1583946 | Aphis gossypii 80765 | AAA|GTATAATTCT...TTCTCTTTAAAC/ATTTTATTTATT...TTTAG|GTT | 0 | 1 | 52.869 |
12240015 | GT-AG | 0 | 1.379262542344416e-05 | 79 | rna-XM_027998392.1 2279631 | 8 | 1583511 | 1583589 | Aphis gossypii 80765 | GCC|GTAAGTCACA...TATGTTATAATA/GTTATAATAATT...GATAG|ATT | 0 | 1 | 68.311 |
12240016 | GT-AG | 0 | 7.613083040049792e-05 | 60 | rna-XM_027998392.1 2279631 | 9 | 1583301 | 1583360 | Aphis gossypii 80765 | GTT|GTAAGTATAT...TATATTTTATTT/ATTTAATTAATT...TGTAG|GTA | 0 | 1 | 76.354 |
12240017 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027998392.1 2279631 | 10 | 1582990 | 1583050 | Aphis gossypii 80765 | TTG|GTGATTTATT...AATTTCTTATTA/AAATTTCTTATT...TATAG|GAG | 1 | 1 | 89.759 |
12240603 | GT-AG | 0 | 1.000000099473604e-05 | 9289 | rna-XM_027998392.1 2279631 | 1 | 1586185 | 1595473 | Aphis gossypii 80765 | TGG|GTTAGTATTG...TTAAACTTAGAA/AATATATTAAAC...AAAAG|TAT | 0 | 3.807 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);