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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 2279631

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12240009 GT-AG 0 0.0002766508869444 73 rna-XM_027998392.1 2279631 2 1585948 1586020 Aphis gossypii 80765 CAA|GTATATAGAG...CTAATTTTTGTT/TTTTGGCTGATG...TTTAG|AGA 2 1 11.475
12240010 GT-AG 0 1.000000099473604e-05 74 rna-XM_027998392.1 2279631 3 1585645 1585718 Aphis gossypii 80765 AAG|GTATGAAATA...TATGCATTATTG/TTAATTTTTATG...TATAG|GTC 0 1 23.753
12240011 GT-AG 0 0.0093840980030261 71 rna-XM_027998392.1 2279631 4 1585398 1585468 Aphis gossypii 80765 TTT|GTATGTATAT...TTTACTTCAATA/TTTTTATTTACT...TTCAG|AGA 2 1 33.19
12240012 GT-AG 0 1.000000099473604e-05 1014 rna-XM_027998392.1 2279631 5 1584287 1585300 Aphis gossypii 80765 AAA|GTAAGTAAAC...AATTCCTTATAT/ATTATATTGATT...TATAG|GTA 0 1 38.391
12240013 GT-AG 0 0.3264179690378413 70 rna-XM_027998392.1 2279631 6 1584060 1584129 Aphis gossypii 80765 AAT|GTATGTTTTT...TTTATTTTAGTT/GTGGTATTTATT...TTTAG|GTA 1 1 46.81
12240014 GT-AG 0 0.0170254449110879 69 rna-XM_027998392.1 2279631 7 1583878 1583946 Aphis gossypii 80765 AAA|GTATAATTCT...TTCTCTTTAAAC/ATTTTATTTATT...TTTAG|GTT 0 1 52.869
12240015 GT-AG 0 1.379262542344416e-05 79 rna-XM_027998392.1 2279631 8 1583511 1583589 Aphis gossypii 80765 GCC|GTAAGTCACA...TATGTTATAATA/GTTATAATAATT...GATAG|ATT 0 1 68.311
12240016 GT-AG 0 7.613083040049792e-05 60 rna-XM_027998392.1 2279631 9 1583301 1583360 Aphis gossypii 80765 GTT|GTAAGTATAT...TATATTTTATTT/ATTTAATTAATT...TGTAG|GTA 0 1 76.354
12240017 GT-AG 0 1.000000099473604e-05 61 rna-XM_027998392.1 2279631 10 1582990 1583050 Aphis gossypii 80765 TTG|GTGATTTATT...AATTTCTTATTA/AAATTTCTTATT...TATAG|GAG 1 1 89.759
12240603 GT-AG 0 1.000000099473604e-05 9289 rna-XM_027998392.1 2279631 1 1586185 1595473 Aphis gossypii 80765 TGG|GTTAGTATTG...TTAAACTTAGAA/AATATATTAAAC...AAAAG|TAT   0 3.807

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 31.673ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)