introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 2279630
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12240001 | GT-AG | 0 | 1.000000099473604e-05 | 529 | rna-XM_027997980.1 2279630 | 1 | 5514577 | 5515105 | Aphis gossypii 80765 | TTG|GTGAGTTCTC...TACATATTAATA/TACATATTAATA...AAAAG|GGA | 0 | 1 | 7.333 |
12240002 | GT-AG | 0 | 1.000000099473604e-05 | 1219 | rna-XM_027997980.1 2279630 | 2 | 5515266 | 5516484 | Aphis gossypii 80765 | ATG|GTAGGTAATA...TAGCTTTTAACA/TATTGTCTTACT...TTAAG|GCC | 1 | 1 | 16.222 |
12240003 | GT-AG | 0 | 8.214817981765858e-05 | 84 | rna-XM_027997980.1 2279630 | 3 | 5516556 | 5516639 | Aphis gossypii 80765 | CAA|GTAAATATTA...GTATTTTTATAC/ATTTGGCTAATT...TTTAG|TAT | 0 | 1 | 20.167 |
12240004 | GT-AG | 0 | 1.000000099473604e-05 | 74 | rna-XM_027997980.1 2279630 | 4 | 5516793 | 5516866 | Aphis gossypii 80765 | ACG|GTGAATAAAA...TGTTTTTTAACA/TGTTTTTTAACA...TATAG|GGA | 0 | 1 | 28.667 |
12240005 | GT-AG | 0 | 1.000000099473604e-05 | 1551 | rna-XM_027997980.1 2279630 | 5 | 5517135 | 5518685 | Aphis gossypii 80765 | CTG|GTAAGAATAA...TATTTATTAATA/TGTTTATTTATT...TCCAG|GAA | 1 | 1 | 43.556 |
12240006 | GT-AG | 0 | 0.0465564354776256 | 1176 | rna-XM_027997980.1 2279630 | 6 | 5518853 | 5520028 | Aphis gossypii 80765 | GGA|GTATGTTTAA...TAAGTATTAACA/TAAGTATTAACA...TTTAG|GAA | 0 | 1 | 52.833 |
12240007 | GT-AG | 0 | 1.000000099473604e-05 | 1059 | rna-XM_027997980.1 2279630 | 7 | 5520165 | 5521223 | Aphis gossypii 80765 | CAG|GTAACACAAA...AATTGTTTAATA/AATTGTTTAATA...TTGAG|GTG | 1 | 1 | 60.389 |
12240008 | GT-AG | 0 | 1.7515618759153982e-05 | 507 | rna-XM_027997980.1 2279630 | 8 | 5521380 | 5521886 | Aphis gossypii 80765 | AAA|GTAAGTGTTT...TTTTCCATAATC/TGTAATCTAATT...TGAAG|GTA | 1 | 1 | 69.056 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);