WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2279629

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
12239993	GT-AG	0.000265001558306	15248	rna-XM_027998195.1 2279629	1	706255	721502	Aphis gossypii 80765	AAA\|GTACGTACCC...AATGTCTTATTT/ATAATTTTCATT...TACAG\|CAA	0	1	15.85
12239994	GT-AG	0.0009407684362294	343	rna-XM_027998195.1 2279629	2	705735	706077	Aphis gossypii 80765	AAG\|GTATAGTCTA...AAAGTTTTAATT/AAAGTTTTAATT...GACAG\|GCT	0	1	25.49
12239995	GT-AG	1.000000099473604e-05	97	rna-XM_027998195.1 2279629	3	705461	705557	Aphis gossypii 80765	AAG\|GTAATGATAA...AGTGTTTTGAAA/TGTATTTTTAAA...AACAG\|GTG	0	1	35.131
12239996	GT-AG	1.2384540172821414e-05	627	rna-XM_027998195.1 2279629	4	704523	705149	Aphis gossypii 80765	AAG\|GTAATTATTT...ACAATTTTAAAT/TTTTAACTGACA...TGCAG\|CAA	2	1	52.07
12239997	GT-AG	1.000000099473604e-05	92	rna-XM_027998195.1 2279629	5	704281	704372	Aphis gossypii 80765	AAA\|GTGAGTATCA...AAAACGCTAATG/AAAACGCTAATG...CACAG\|AAC	2	1	60.24
12239998	GT-AG	1.000000099473604e-05	84	rna-XM_027998195.1 2279629	6	703947	704030	Aphis gossypii 80765	CAC\|GTAAGTACCC...GATTTTTTATAT/TTTATATTAATC...TACAG\|GAA	0	1	73.856
12239999	GT-AG	1.000000099473604e-05	83	rna-XM_027998195.1 2279629	7	703774	703856	Aphis gossypii 80765	AAG\|GTTGGTGTGG...ATCTCCTTACTT/TATCTCCTTACT...TATAG\|GCA	0	1	78.758
12240000	GT-AG	1.000000099473604e-05	157	rna-XM_027998195.1 2279629	9	703260	703416	Aphis gossypii 80765	ACG\|GTGAGTACGA...TTTTTTTTACCG/TTTTTTTTTACC...CACAG\|AAT	2	1	98.148

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);