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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 2279627

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239982 GT-AG 0 0.001052726604109 61 rna-XM_027996609.1 2279627 1 1249822 1249882 Aphis gossypii 80765 CAG|GTACACTATA...TGCTTATTAATT/TGTATGCTTATT...TGTAG|GAT 0 1 11.201
12239983 GT-AG 0 6.219864156582559e-05 84 rna-XM_027996609.1 2279627 2 1250002 1250085 Aphis gossypii 80765 CAG|GTATTTAATT...TCACTCATAAAA/ATTTCACTCATA...TCTAG|GAT 2 1 17.641
12239984 GT-AG 0 1.000000099473604e-05 76 rna-XM_027996609.1 2279627 3 1250201 1250276 Aphis gossypii 80765 AGA|GTGAGTAACT...GTATATTTATAT/TGTATATTTATA...TTTAG|TTT 0 1 23.864
12239985 GT-AG 0 0.000293395489597 353 rna-XM_027996609.1 2279627 4 1250436 1250788 Aphis gossypii 80765 AAG|GTGCCCAGAT...TAATTATTAATT/ATATTATTTACT...AATAG|AAA 0 1 32.468
12239986 GT-AG 0 0.0002855509133019 64 rna-XM_027996609.1 2279627 5 1251026 1251089 Aphis gossypii 80765 AAT|GTAAGTTTAT...AATTTTTTAAAT/AATTTTTTAAAT...TTCAG|CAC 0 1 45.292
12239987 GT-AG 0 1.000000099473604e-05 55 rna-XM_027996609.1 2279627 6 1251264 1251318 Aphis gossypii 80765 CAT|GTGAGTAAAA...AAATTCTAAATA/CAAATTCTAAAT...TACAG|GAC 0 1 54.708
12239988 GT-AG 0 0.0901688551680835 187 rna-XM_027996609.1 2279627 7 1251649 1251835 Aphis gossypii 80765 AAA|GTATGTATTT...ATTCTCTTAATT/ATTCTCTTAATT...TCAAG|GTC 0 1 72.565
12239989 GT-AG 0 0.3409855481693998 69 rna-XM_027996609.1 2279627 8 1252004 1252072 Aphis gossypii 80765 AAA|GTATGTTTTA...TTATTTTTAATT/TTATTTTTAATT...TATAG|ATG 0 1 81.656
12239990 GT-AG 0 1.000000099473604e-05 78 rna-XM_027996609.1 2279627 9 1252169 1252246 Aphis gossypii 80765 AAA|GTTAGTGCAA...TTATTTTTATAA/GTTATTTTTATA...TTTAG|AAT 0 1 86.851
12239991 GT-AG 0 1.000000099473604e-05 1104 rna-XM_027996609.1 2279627 10 1252349 1253452 Aphis gossypii 80765 GAA|GTAAGTTATC...TAAGTATAAACT/TATAAACTAACA...CTTAG|GTA 0 1 92.37

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 50.597ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)