introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 2279624
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239967 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_027984062.1 2279624 | 1 | 5524515 | 5524593 | Aphis gossypii 80765 | ATG|GTGAGTTGAG...TTATCCTTATCT/TATTTTTTTATT...AATAG|GTG | 0 | 1 | 0.159 |
12239968 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027984062.1 2279624 | 2 | 5524801 | 5524861 | Aphis gossypii 80765 | CAA|GTGAGTTAAT...GTAATTTTAATT/GTAATTTTAATT...AATAG|TTG | 0 | 1 | 11.164 |
12239969 | GT-AG | 0 | 0.002023833382072 | 158 | rna-XM_027984062.1 2279624 | 3 | 5525068 | 5525225 | Aphis gossypii 80765 | AAA|GTAGGTTTTA...TTTTTTTTATTT/ATTTTTTTTATT...ATTAG|GTT | 2 | 1 | 22.116 |
12239970 | GC-AG | 0 | 1.000000099473604e-05 | 54 | rna-XM_027984062.1 2279624 | 4 | 5525417 | 5525470 | Aphis gossypii 80765 | ATC|GCAAGTACTT...GGCAACTTATAT/TGATGTTTTATT...TTTAG|GTG | 1 | 1 | 32.27 |
12239971 | GT-AG | 0 | 0.0003061251136609 | 71 | rna-XM_027984062.1 2279624 | 5 | 5525611 | 5525681 | Aphis gossypii 80765 | GCA|GTAAGTCTCA...TTGTCATTAACA/ATTGTTGTCATT...AAAAG|GGT | 0 | 1 | 39.713 |
12239972 | GT-AG | 0 | 1.4443366324054733e-05 | 77 | rna-XM_027984062.1 2279624 | 6 | 5525880 | 5525956 | Aphis gossypii 80765 | ATG|GTAAATTAAA...TATTTATTAAAT/ATAATATTTATT...ATCAG|TGT | 0 | 1 | 50.239 |
12239973 | GT-AG | 0 | 0.000212606596566 | 317 | rna-XM_027984062.1 2279624 | 7 | 5526680 | 5526996 | Aphis gossypii 80765 | TTG|GTAAGCTATT...ATATCATTAACA/ATAAAATTTATT...TTCAG|GAA | 0 | 1 | 88.676 |
12239974 | GT-AG | 0 | 3.7085049384246246e-05 | 751 | rna-XM_027984062.1 2279624 | 8 | 5527120 | 5527870 | Aphis gossypii 80765 | GAG|GTATGTGACT...TTATTATTATTA/ATTATTATTATT...TTTAG|ACT | 0 | 1 | 95.215 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);